encoding2df {biogram}

Convert encoding to data frame

Description

Converts an encoding to a data frame.

Usage

encoding2df(x, sort = FALSE)

Arguments

x

encoding.

sort

if TRUE rows are sorted according to elements.

Details

The encoding is a list of groups to which elements of an alphabet should be reduced. All elements of the alphabet (all amino acids or all nucleotides) should appear in the encoding.

Value

data frame with two columns. First column represents an index of a group in the supplied encoding and the second column contains all elements of the encoding.

See Also

calc_ed: calculate the encoding distance between two encodings. encoding2df: converts an encoding to a data frame. validate_encoding: validate a structure of an encoding.

Examples

create_encoding(aaprop[1L:5, ], 5)