R: Normalized amino acids properties

aaprop {biogram}

R Documentation

Normalized amino acids properties

Description

Normalized (0-1) 554 amino acid properties as retreived from AAIndex database (release 9.1) enriched with contactivity of amino acids.

Format

A data frames with 20 columns and 600 rows.

Details

Following properties are included (AAIndex key: description of the property)

ANDN920101: alpha-CH chemical shifts (Andersen et al., 1992)
ARGP820101: Hydrophobicity index (Argos et al., 1982)
ARGP820102: Signal sequence helical potential (Argos et al., 1982)
ARGP820103: Membrane-buried preference parameters (Argos et al., 1982)
BEGF750101: Conformational parameter of inner helix (Beghin-Dirkx, 1975)
BEGF750102: Conformational parameter of beta-structure (Beghin-Dirkx, 1975)
BEGF750103: Conformational parameter of beta-turn (Beghin-Dirkx, 1975)
BHAR880101: Average flexibility indices (Bhaskaran-Ponnuswamy, 1988)
BIGC670101: Residue volume (Bigelow, 1967)
BIOV880101: Information value for accessibility; average fraction 35% (Biou et al., 1988)
BIOV880102: Information value for accessibility; average fraction 23% (Biou et al., 1988)
BROC820101: Retention coefficient in TFA (Browne et al., 1982)
BROC820102: Retention coefficient in HFBA (Browne et al., 1982)
BULH740101: Transfer free energy to surface (Bull-Breese, 1974)
BULH740102: Apparent partial specific volume (Bull-Breese, 1974)
BUNA790101: alpha-NH chemical shifts (Bundi-Wuthrich, 1979)
BUNA790102: alpha-CH chemical shifts (Bundi-Wuthrich, 1979)
BUNA790103: Spin-spin coupling constants 3JHalpha-NH (Bundi-Wuthrich, 1979)
BURA740101: Normalized frequency of alpha-helix (Burgess et al., 1974)
BURA740102: Normalized frequency of extended structure (Burgess et al., 1974)
CHAM810101: Steric parameter (Charton, 1981)
CHAM820101: Polarizability parameter (Charton-Charton, 1982)
CHAM820102: Free energy of solution in water, kcal/mole (Charton-Charton, 1982)
CHAM830101: The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983)
CHAM830102: A parameter defined from the residuals obtained from the best correlation of the Chou-Fasman parameter of beta-sheet (Charton-Charton, 1983)
CHAM830103: The number of atoms in the side chain labelled 1+1 (Charton-Charton, 1983)
CHAM830104: The number of atoms in the side chain labelled 2+1 (Charton-Charton, 1983)
CHAM830105: The number of atoms in the side chain labelled 3+1 (Charton-Charton, 1983)
CHAM830106: The number of bonds in the longest chain (Charton-Charton, 1983)
CHAM830107: A parameter of charge transfer capability (Charton-Charton, 1983)
CHAM830108: A parameter of charge transfer donor capability (Charton-Charton, 1983)
CHOC750101: Average volume of buried residue (Chothia, 1975)
CHOC760101: Residue accessible surface area in tripeptide (Chothia, 1976)
CHOC760102: Residue accessible surface area in folded protein (Chothia, 1976)
CHOC760103: Proportion of residues 95% buried (Chothia, 1976)
CHOC760104: Proportion of residues 100% buried (Chothia, 1976)
CHOP780101: Normalized frequency of beta-turn (Chou-Fasman, 1978a)
CHOP780201: Normalized frequency of alpha-helix (Chou-Fasman, 1978b)
CHOP780202: Normalized frequency of beta-sheet (Chou-Fasman, 1978b)
CHOP780203: Normalized frequency of beta-turn (Chou-Fasman, 1978b)
CHOP780204: Normalized frequency of N-terminal helix (Chou-Fasman, 1978b)
CHOP780205: Normalized frequency of C-terminal helix (Chou-Fasman, 1978b)
CHOP780206: Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b)
CHOP780207: Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b)
CHOP780208: Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b)
CHOP780209: Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b)
CHOP780210: Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b)
CHOP780211: Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b)
CHOP780212: Frequency of the 1st residue in turn (Chou-Fasman, 1978b)
CHOP780213: Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
CHOP780214: Frequency of the 3rd residue in turn (Chou-Fasman, 1978b)
CHOP780215: Frequency of the 4th residue in turn (Chou-Fasman, 1978b)
CHOP780216: Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b)
CIDH920101: Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992)
CIDH920102: Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992)
CIDH920103: Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992)
CIDH920104: Normalized hydrophobicity scales for alpha/beta-proteins (Cid et al., 1992)
CIDH920105: Normalized average hydrophobicity scales (Cid et al., 1992)
COHE430101: Partial specific volume (Cohn-Edsall, 1943)
CRAJ730101: Normalized frequency of middle helix (Crawford et al., 1973)
CRAJ730102: Normalized frequency of beta-sheet (Crawford et al., 1973)
CRAJ730103: Normalized frequency of turn (Crawford et al., 1973)
DAWD720101: Size (Dawson, 1972)
DAYM780101: Amino acid composition (Dayhoff et al., 1978a)
DAYM780201: Relative mutability (Dayhoff et al., 1978b)
DESM900101: Membrane preference for cytochrome b: MPH89 (Degli Esposti et al., 1990)
DESM900102: Average membrane preference: AMP07 (Degli Esposti et al., 1990)
EISD840101: Consensus normalized hydrophobicity scale (Eisenberg, 1984)
EISD860101: Solvation free energy (Eisenberg-McLachlan, 1986)
EISD860102: Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986)
EISD860103: Direction of hydrophobic moment (Eisenberg-McLachlan, 1986)
FASG760101: Molecular weight (Fasman, 1976)
FASG760102: Melting point (Fasman, 1976)
FASG760103: Optical rotation (Fasman, 1976)
FASG760104: pK-N (Fasman, 1976)
FASG760105: pK-C (Fasman, 1976)
FAUJ830101: Hydrophobic parameter pi (Fauchere-Pliska, 1983)
FAUJ880101: Graph shape index (Fauchere et al., 1988)
FAUJ880102: Smoothed upsilon steric parameter (Fauchere et al., 1988)
FAUJ880103: Normalized van der Waals volume (Fauchere et al., 1988)
FAUJ880104: STERIMOL length of the side chain (Fauchere et al., 1988)
FAUJ880105: STERIMOL minimum width of the side chain (Fauchere et al., 1988)
FAUJ880106: STERIMOL maximum width of the side chain (Fauchere et al., 1988)
FAUJ880107: N.m.r. chemical shift of alpha-carbon (Fauchere et al., 1988)
FAUJ880108: Localized electrical effect (Fauchere et al., 1988)
FAUJ880109: Number of hydrogen bond donors (Fauchere et al., 1988)
FAUJ880110: Number of full nonbonding orbitals (Fauchere et al., 1988)
FAUJ880111: Positive charge (Fauchere et al., 1988)
FAUJ880112: Negative charge (Fauchere et al., 1988)
FAUJ880113: pK-a(RCOOH) (Fauchere et al., 1988)
FINA770101: Helix-coil equilibrium constant (Finkelstein-Ptitsyn, 1977)
FINA910101: Helix initiation parameter at posision i-1 (Finkelstein et al., 1991)
FINA910102: Helix initiation parameter at posision i,i+1,i+2 (Finkelstein et al., 1991)
FINA910103: Helix termination parameter at posision j-2,j-1,j (Finkelstein et al., 1991)
FINA910104: Helix termination parameter at posision j+1 (Finkelstein et al., 1991)
GARJ730101: Partition coefficient (Garel et al., 1973)
GEIM800101: Alpha-helix indices (Geisow-Roberts, 1980)
GEIM800102: Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980)
GEIM800103: Alpha-helix indices for beta-proteins (Geisow-Roberts, 1980)
GEIM800104: Alpha-helix indices for alpha/beta-proteins (Geisow-Roberts, 1980)
GEIM800105: Beta-strand indices (Geisow-Roberts, 1980)
GEIM800106: Beta-strand indices for beta-proteins (Geisow-Roberts, 1980)
GEIM800107: Beta-strand indices for alpha/beta-proteins (Geisow-Roberts, 1980)
GEIM800108: Aperiodic indices (Geisow-Roberts, 1980)
GEIM800109: Aperiodic indices for alpha-proteins (Geisow-Roberts, 1980)
GEIM800110: Aperiodic indices for beta-proteins (Geisow-Roberts, 1980)
GEIM800111: Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980)
GOLD730101: Hydrophobicity factor (Goldsack-Chalifoux, 1973)
GOLD730102: Residue volume (Goldsack-Chalifoux, 1973)
GRAR740101: Composition (Grantham, 1974)
GRAR740102: Polarity (Grantham, 1974)
GRAR740103: Volume (Grantham, 1974)
GUYH850101: Partition energy (Guy, 1985)
HOPA770101: Hydration number (Hopfinger, 1971), Cited by Charton-Charton (1982)
HOPT810101: Hydrophilicity value (Hopp-Woods, 1981)
HUTJ700101: Heat capacity (Hutchens, 1970)
HUTJ700102: Absolute entropy (Hutchens, 1970)
HUTJ700103: Entropy of formation (Hutchens, 1970)
ISOY800101: Normalized relative frequency of alpha-helix (Isogai et al., 1980)
ISOY800102: Normalized relative frequency of extended structure (Isogai et al., 1980)
ISOY800103: Normalized relative frequency of bend (Isogai et al., 1980)
ISOY800104: Normalized relative frequency of bend R (Isogai et al., 1980)
ISOY800105: Normalized relative frequency of bend S (Isogai et al., 1980)
ISOY800106: Normalized relative frequency of helix end (Isogai et al., 1980)
ISOY800107: Normalized relative frequency of double bend (Isogai et al., 1980)
ISOY800108: Normalized relative frequency of coil (Isogai et al., 1980)
JANJ780101: Average accessible surface area (Janin et al., 1978)
JANJ780102: Percentage of buried residues (Janin et al., 1978)
JANJ780103: Percentage of exposed residues (Janin et al., 1978)
JANJ790101: Ratio of buried and accessible molar fractions (Janin, 1979)
JANJ790102: Transfer free energy (Janin, 1979)
JOND750101: Hydrophobicity (Jones, 1975)
JOND750102: pK (-COOH) (Jones, 1975)
JOND920101: Relative frequency of occurrence (Jones et al., 1992)
JOND920102: Relative mutability (Jones et al., 1992)
JUKT750101: Amino acid distribution (Jukes et al., 1975)
JUNJ780101: Sequence frequency (Jungck, 1978)
KANM800101: Average relative probability of helix (Kanehisa-Tsong, 1980)
KANM800102: Average relative probability of beta-sheet (Kanehisa-Tsong, 1980)
KANM800103: Average relative probability of inner helix (Kanehisa-Tsong, 1980)
KANM800104: Average relative probability of inner beta-sheet (Kanehisa-Tsong, 1980)
KARP850101: Flexibility parameter for no rigid neighbors (Karplus-Schulz, 1985)
KARP850102: Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985)
KARP850103: Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985)
KHAG800101: The Kerr-constant increments (Khanarian-Moore, 1980)
KLEP840101: Net charge (Klein et al., 1984)
KRIW710101: Side chain interaction parameter (Krigbaum-Rubin, 1971)
KRIW790101: Side chain interaction parameter (Krigbaum-Komoriya, 1979)
KRIW790102: Fraction of site occupied by water (Krigbaum-Komoriya, 1979)
KRIW790103: Side chain volume (Krigbaum-Komoriya, 1979)
KYTJ820101: Hydropathy index (Kyte-Doolittle, 1982)
LAWE840101: Transfer free energy, CHP/water (Lawson et al., 1984)
LEVM760101: Hydrophobic parameter (Levitt, 1976)
LEVM760102: Distance between C-alpha and centroid of side chain (Levitt, 1976)
LEVM760103: Side chain angle theta(AAR) (Levitt, 1976)
LEVM760104: Side chain torsion angle phi(AAAR) (Levitt, 1976)
LEVM760105: Radius of gyration of side chain (Levitt, 1976)
LEVM760106: van der Waals parameter R0 (Levitt, 1976)
LEVM760107: van der Waals parameter epsilon (Levitt, 1976)
LEVM780101: Normalized frequency of alpha-helix, with weights (Levitt, 1978)
LEVM780102: Normalized frequency of beta-sheet, with weights (Levitt, 1978)
LEVM780103: Normalized frequency of reverse turn, with weights (Levitt, 1978)
LEVM780104: Normalized frequency of alpha-helix, unweighted (Levitt, 1978)
LEVM780105: Normalized frequency of beta-sheet, unweighted (Levitt, 1978)
LEVM780106: Normalized frequency of reverse turn, unweighted (Levitt, 1978)
LEWP710101: Frequency of occurrence in beta-bends (Lewis et al., 1971)
LIFS790101: Conformational preference for all beta-strands (Lifson-Sander, 1979)
LIFS790102: Conformational preference for parallel beta-strands (Lifson-Sander, 1979)
LIFS790103: Conformational preference for antiparallel beta-strands (Lifson-Sander, 1979)
MANP780101: Average surrounding hydrophobicity (Manavalan-Ponnuswamy, 1978)
MAXF760101: Normalized frequency of alpha-helix (Maxfield-Scheraga, 1976)
MAXF760102: Normalized frequency of extended structure (Maxfield-Scheraga, 1976)
MAXF760103: Normalized frequency of zeta R (Maxfield-Scheraga, 1976)
MAXF760104: Normalized frequency of left-handed alpha-helix (Maxfield-Scheraga, 1976)
MAXF760105: Normalized frequency of zeta L (Maxfield-Scheraga, 1976)
MAXF760106: Normalized frequency of alpha region (Maxfield-Scheraga, 1976)
MCMT640101: Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
MEEJ800101: Retention coefficient in HPLC, pH7.4 (Meek, 1980)
MEEJ800102: Retention coefficient in HPLC, pH2.1 (Meek, 1980)
MEEJ810101: Retention coefficient in NaClO4 (Meek-Rossetti, 1981)
MEEJ810102: Retention coefficient in NaH2PO4 (Meek-Rossetti, 1981)
MEIH800101: Average reduced distance for C-alpha (Meirovitch et al., 1980)
MEIH800102: Average reduced distance for side chain (Meirovitch et al., 1980)
MEIH800103: Average side chain orientation angle (Meirovitch et al., 1980)
MIYS850101: Effective partition energy (Miyazawa-Jernigan, 1985)
NAGK730101: Normalized frequency of alpha-helix (Nagano, 1973)
NAGK730102: Normalized frequency of bata-structure (Nagano, 1973)
NAGK730103: Normalized frequency of coil (Nagano, 1973)
NAKH900101: AA composition of total proteins (Nakashima et al., 1990)
NAKH900102: SD of AA composition of total proteins (Nakashima et al., 1990)
NAKH900103: AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900104: Normalized composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900106: Normalized composition from animal (Nakashima et al., 1990)
NAKH900107: AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
NAKH900108: Normalized composition from fungi and plant (Nakashima et al., 1990)
NAKH900109: AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900110: Normalized composition of membrane proteins (Nakashima et al., 1990)
NAKH900111: Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900112: Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900113: Ratio of average and computed composition (Nakashima et al., 1990)
NAKH920101: AA composition of CYT of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920102: AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920103: AA composition of EXT of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920104: AA composition of EXT2 of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920105: AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920106: AA composition of CYT of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920107: AA composition of EXT of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920108: AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NISK800101: 8 A contact number (Nishikawa-Ooi, 1980)
NISK860101: 14 A contact number (Nishikawa-Ooi, 1986)
NOZY710101: Transfer energy, organic solvent/water (Nozaki-Tanford, 1971)
OOBM770101: Average non-bonded energy per atom (Oobatake-Ooi, 1977)
OOBM770102: Short and medium range non-bonded energy per atom (Oobatake-Ooi, 1977)
OOBM770103: Long range non-bonded energy per atom (Oobatake-Ooi, 1977)
OOBM770104: Average non-bonded energy per residue (Oobatake-Ooi, 1977)
OOBM770105: Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977)
OOBM850101: Optimized beta-structure-coil equilibrium constant (Oobatake et al., 1985)
OOBM850102: Optimized propensity to form reverse turn (Oobatake et al., 1985)
OOBM850103: Optimized transfer energy parameter (Oobatake et al., 1985)
OOBM850104: Optimized average non-bonded energy per atom (Oobatake et al., 1985)
OOBM850105: Optimized side chain interaction parameter (Oobatake et al., 1985)
PALJ810101: Normalized frequency of alpha-helix from LG (Palau et al., 1981)
PALJ810102: Normalized frequency of alpha-helix from CF (Palau et al., 1981)
PALJ810103: Normalized frequency of beta-sheet from LG (Palau et al., 1981)
PALJ810104: Normalized frequency of beta-sheet from CF (Palau et al., 1981)
PALJ810105: Normalized frequency of turn from LG (Palau et al., 1981)
PALJ810106: Normalized frequency of turn from CF (Palau et al., 1981)
PALJ810107: Normalized frequency of alpha-helix in all-alpha class (Palau et al., 1981)
PALJ810108: Normalized frequency of alpha-helix in alpha+beta class (Palau et al., 1981)
PALJ810109: Normalized frequency of alpha-helix in alpha/beta class (Palau et al., 1981)
PALJ810110: Normalized frequency of beta-sheet in all-beta class (Palau et al., 1981)
PALJ810111: Normalized frequency of beta-sheet in alpha+beta class (Palau et al., 1981)
PALJ810112: Normalized frequency of beta-sheet in alpha/beta class (Palau et al., 1981)
PALJ810113: Normalized frequency of turn in all-alpha class (Palau et al., 1981)
PALJ810114: Normalized frequency of turn in all-beta class (Palau et al., 1981)
PALJ810115: Normalized frequency of turn in alpha+beta class (Palau et al., 1981)
PALJ810116: Normalized frequency of turn in alpha/beta class (Palau et al., 1981)
PARJ860101: HPLC parameter (Parker et al., 1986)
PLIV810101: Partition coefficient (Pliska et al., 1981)
PONP800101: Surrounding hydrophobicity in folded form (Ponnuswamy et al., 1980)
PONP800102: Average gain in surrounding hydrophobicity (Ponnuswamy et al., 1980)
PONP800103: Average gain ratio in surrounding hydrophobicity (Ponnuswamy et al., 1980)
PONP800104: Surrounding hydrophobicity in alpha-helix (Ponnuswamy et al., 1980)
PONP800105: Surrounding hydrophobicity in beta-sheet (Ponnuswamy et al., 1980)
PONP800106: Surrounding hydrophobicity in turn (Ponnuswamy et al., 1980)
PONP800107: Accessibility reduction ratio (Ponnuswamy et al., 1980)
PONP800108: Average number of surrounding residues (Ponnuswamy et al., 1980)
PRAM820101: Intercept in regression analysis (Prabhakaran-Ponnuswamy, 1982)
PRAM820102: Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
PRAM820103: Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982)
PRAM900101: Hydrophobicity (Prabhakaran, 1990)
PRAM900102: Relative frequency in alpha-helix (Prabhakaran, 1990)
PRAM900103: Relative frequency in beta-sheet (Prabhakaran, 1990)
PRAM900104: Relative frequency in reverse-turn (Prabhakaran, 1990)
PTIO830101: Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)
PTIO830102: Beta-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)
QIAN880101: Weights for alpha-helix at the window position of -6 (Qian-Sejnowski, 1988)
QIAN880102: Weights for alpha-helix at the window position of -5 (Qian-Sejnowski, 1988)
QIAN880103: Weights for alpha-helix at the window position of -4 (Qian-Sejnowski, 1988)
QIAN880104: Weights for alpha-helix at the window position of -3 (Qian-Sejnowski, 1988)
QIAN880105: Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988)
QIAN880106: Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988)
QIAN880107: Weights for alpha-helix at the window position of 0 (Qian-Sejnowski, 1988)
QIAN880108: Weights for alpha-helix at the window position of 1 (Qian-Sejnowski, 1988)
QIAN880109: Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988)
QIAN880110: Weights for alpha-helix at the window position of 3 (Qian-Sejnowski, 1988)
QIAN880111: Weights for alpha-helix at the window position of 4 (Qian-Sejnowski, 1988)
QIAN880112: Weights for alpha-helix at the window position of 5 (Qian-Sejnowski, 1988)
QIAN880113: Weights for alpha-helix at the window position of 6 (Qian-Sejnowski, 1988)
QIAN880114: Weights for beta-sheet at the window position of -6 (Qian-Sejnowski, 1988)
QIAN880115: Weights for beta-sheet at the window position of -5 (Qian-Sejnowski, 1988)
QIAN880116: Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988)
QIAN880117: Weights for beta-sheet at the window position of -3 (Qian-Sejnowski, 1988)
QIAN880118: Weights for beta-sheet at the window position of -2 (Qian-Sejnowski, 1988)
QIAN880119: Weights for beta-sheet at the window position of -1 (Qian-Sejnowski, 1988)
QIAN880120: Weights for beta-sheet at the window position of 0 (Qian-Sejnowski, 1988)
QIAN880121: Weights for beta-sheet at the window position of 1 (Qian-Sejnowski, 1988)
QIAN880122: Weights for beta-sheet at the window position of 2 (Qian-Sejnowski, 1988)
QIAN880123: Weights for beta-sheet at the window position of 3 (Qian-Sejnowski, 1988)
QIAN880124: Weights for beta-sheet at the window position of 4 (Qian-Sejnowski, 1988)
QIAN880125: Weights for beta-sheet at the window position of 5 (Qian-Sejnowski, 1988)
QIAN880126: Weights for beta-sheet at the window position of 6 (Qian-Sejnowski, 1988)
QIAN880127: Weights for coil at the window position of -6 (Qian-Sejnowski, 1988)
QIAN880128: Weights for coil at the window position of -5 (Qian-Sejnowski, 1988)
QIAN880129: Weights for coil at the window position of -4 (Qian-Sejnowski, 1988)
QIAN880130: Weights for coil at the window position of -3 (Qian-Sejnowski, 1988)
QIAN880131: Weights for coil at the window position of -2 (Qian-Sejnowski, 1988)
QIAN880132: Weights for coil at the window position of -1 (Qian-Sejnowski, 1988)
QIAN880133: Weights for coil at the window position of 0 (Qian-Sejnowski, 1988)
QIAN880134: Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)
QIAN880135: Weights for coil at the window position of 2 (Qian-Sejnowski, 1988)
QIAN880136: Weights for coil at the window position of 3 (Qian-Sejnowski, 1988)
QIAN880137: Weights for coil at the window position of 4 (Qian-Sejnowski, 1988)
QIAN880138: Weights for coil at the window position of 5 (Qian-Sejnowski, 1988)
QIAN880139: Weights for coil at the window position of 6 (Qian-Sejnowski, 1988)
RACS770101: Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977)
RACS770102: Average reduced distance for side chain (Rackovsky-Scheraga, 1977)
RACS770103: Side chain orientational preference (Rackovsky-Scheraga, 1977)
RACS820101: Average relative fractional occurrence in A0(i) (Rackovsky-Scheraga, 1982)
RACS820102: Average relative fractional occurrence in AR(i) (Rackovsky-Scheraga, 1982)
RACS820103: Average relative fractional occurrence in AL(i) (Rackovsky-Scheraga, 1982)
RACS820104: Average relative fractional occurrence in EL(i) (Rackovsky-Scheraga, 1982)
RACS820105: Average relative fractional occurrence in E0(i) (Rackovsky-Scheraga, 1982)
RACS820106: Average relative fractional occurrence in ER(i) (Rackovsky-Scheraga, 1982)
RACS820107: Average relative fractional occurrence in A0(i-1) (Rackovsky-Scheraga, 1982)
RACS820108: Average relative fractional occurrence in AR(i-1) (Rackovsky-Scheraga, 1982)
RACS820109: Average relative fractional occurrence in AL(i-1) (Rackovsky-Scheraga, 1982)
RACS820110: Average relative fractional occurrence in EL(i-1) (Rackovsky-Scheraga, 1982)
RACS820111: Average relative fractional occurrence in E0(i-1) (Rackovsky-Scheraga, 1982)
RACS820112: Average relative fractional occurrence in ER(i-1) (Rackovsky-Scheraga, 1982)
RACS820113: Value of theta(i) (Rackovsky-Scheraga, 1982)
RACS820114: Value of theta(i-1) (Rackovsky-Scheraga, 1982)
RADA880101: Transfer free energy from chx to wat (Radzicka-Wolfenden, 1988)
RADA880102: Transfer free energy from oct to wat (Radzicka-Wolfenden, 1988)
RADA880103: Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)
RADA880104: Transfer free energy from chx to oct (Radzicka-Wolfenden, 1988)
RADA880105: Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)
RADA880106: Accessible surface area (Radzicka-Wolfenden, 1988)
RADA880107: Energy transfer from out to in(95%buried) (Radzicka-Wolfenden, 1988)
RADA880108: Mean polarity (Radzicka-Wolfenden, 1988)
RICJ880101: Relative preference value at N" (Richardson-Richardson, 1988)
RICJ880102: Relative preference value at N' (Richardson-Richardson, 1988)
RICJ880103: Relative preference value at N-cap (Richardson-Richardson, 1988)
RICJ880104: Relative preference value at N1 (Richardson-Richardson, 1988)
RICJ880105: Relative preference value at N2 (Richardson-Richardson, 1988)
RICJ880106: Relative preference value at N3 (Richardson-Richardson, 1988)
RICJ880107: Relative preference value at N4 (Richardson-Richardson, 1988)
RICJ880108: Relative preference value at N5 (Richardson-Richardson, 1988)
RICJ880109: Relative preference value at Mid (Richardson-Richardson, 1988)
RICJ880110: Relative preference value at C5 (Richardson-Richardson, 1988)
RICJ880111: Relative preference value at C4 (Richardson-Richardson, 1988)
RICJ880112: Relative preference value at C3 (Richardson-Richardson, 1988)
RICJ880113: Relative preference value at C2 (Richardson-Richardson, 1988)
RICJ880114: Relative preference value at C1 (Richardson-Richardson, 1988)
RICJ880115: Relative preference value at C-cap (Richardson-Richardson, 1988)
RICJ880116: Relative preference value at C' (Richardson-Richardson, 1988)
RICJ880117: Relative preference value at C" (Richardson-Richardson, 1988)
ROBB760101: Information measure for alpha-helix (Robson-Suzuki, 1976)
ROBB760102: Information measure for N-terminal helix (Robson-Suzuki, 1976)
ROBB760103: Information measure for middle helix (Robson-Suzuki, 1976)
ROBB760104: Information measure for C-terminal helix (Robson-Suzuki, 1976)
ROBB760105: Information measure for extended (Robson-Suzuki, 1976)
ROBB760106: Information measure for pleated-sheet (Robson-Suzuki, 1976)
ROBB760107: Information measure for extended without H-bond (Robson-Suzuki, 1976)
ROBB760108: Information measure for turn (Robson-Suzuki, 1976)
ROBB760109: Information measure for N-terminal turn (Robson-Suzuki, 1976)
ROBB760110: Information measure for middle turn (Robson-Suzuki, 1976)
ROBB760111: Information measure for C-terminal turn (Robson-Suzuki, 1976)
ROBB760112: Information measure for coil (Robson-Suzuki, 1976)
ROBB760113: Information measure for loop (Robson-Suzuki, 1976)
ROBB790101: Hydration free energy (Robson-Osguthorpe, 1979)
ROSG850101: Mean area buried on transfer (Rose et al., 1985)
ROSG850102: Mean fractional area loss (Rose et al., 1985)
ROSM880101: Side chain hydropathy, uncorrected for solvation (Roseman, 1988)
ROSM880102: Side chain hydropathy, corrected for solvation (Roseman, 1988)
ROSM880103: Loss of Side chain hydropathy by helix formation (Roseman, 1988)
SIMZ760101: Transfer free energy (Simon, 1976), Cited by Charton-Charton (1982)
SNEP660101: Principal component I (Sneath, 1966)
SNEP660102: Principal component II (Sneath, 1966)
SNEP660103: Principal component III (Sneath, 1966)
SNEP660104: Principal component IV (Sneath, 1966)
SUEM840101: Zimm-Bragg parameter s at 20 C (Sueki et al., 1984)
SUEM840102: Zimm-Bragg parameter sigma x 1.0E4 (Sueki et al., 1984)
SWER830101: Optimal matching hydrophobicity (Sweet-Eisenberg, 1983)
TANS770101: Normalized frequency of alpha-helix (Tanaka-Scheraga, 1977)
TANS770102: Normalized frequency of isolated helix (Tanaka-Scheraga, 1977)
TANS770103: Normalized frequency of extended structure (Tanaka-Scheraga, 1977)
TANS770104: Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
TANS770105: Normalized frequency of chain reversal S (Tanaka-Scheraga, 1977)
TANS770106: Normalized frequency of chain reversal D (Tanaka-Scheraga, 1977)
TANS770107: Normalized frequency of left-handed helix (Tanaka-Scheraga, 1977)
TANS770108: Normalized frequency of zeta R (Tanaka-Scheraga, 1977)
TANS770109: Normalized frequency of coil (Tanaka-Scheraga, 1977)
TANS770110: Normalized frequency of chain reversal (Tanaka-Scheraga, 1977)
VASM830101: Relative population of conformational state A (Vasquez et al., 1983)
VASM830102: Relative population of conformational state C (Vasquez et al., 1983)
VASM830103: Relative population of conformational state E (Vasquez et al., 1983)
VELV850101: Electron-ion interaction potential (Veljkovic et al., 1985)
VENT840101: Bitterness (Venanzi, 1984)
VHEG790101: Transfer free energy to lipophilic phase (von Heijne-Blomberg, 1979)
WARP780101: Average interactions per side chain atom (Warme-Morgan, 1978)
WEBA780101: RF value in high salt chromatography (Weber-Lacey, 1978)
WERD780101: Propensity to be buried inside (Wertz-Scheraga, 1978)
WERD780102: Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978)
WERD780103: Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978)
WERD780104: Free energy change of epsilon(i) to alpha(Rh) (Wertz-Scheraga, 1978)
WOEC730101: Polar requirement (Woese, 1973)
WOLR810101: Hydration potential (Wolfenden et al., 1981)
WOLS870101: Principal property value z1 (Wold et al., 1987)
WOLS870102: Principal property value z2 (Wold et al., 1987)
WOLS870103: Principal property value z3 (Wold et al., 1987)
YUTK870101: Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987)
YUTK870102: Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)
YUTK870103: Activation Gibbs energy of unfolding, pH7.0 (Yutani et al., 1987)
YUTK870104: Activation Gibbs energy of unfolding, pH9.0 (Yutani et al., 1987)
ZASB820101: Dependence of partition coefficient on ionic strength (Zaslavsky et al., 1982)
ZIMJ680101: Hydrophobicity (Zimmerman et al., 1968)
ZIMJ680102: Bulkiness (Zimmerman et al., 1968)
ZIMJ680103: Polarity (Zimmerman et al., 1968)
ZIMJ680104: Isoelectric point (Zimmerman et al., 1968)
ZIMJ680105: RF rank (Zimmerman et al., 1968)
AURR980101: Normalized positional residue frequency at helix termini N4'(Aurora-Rose, 1998)
AURR980102: Normalized positional residue frequency at helix termini N"' (Aurora-Rose, 1998)
AURR980103: Normalized positional residue frequency at helix termini N" (Aurora-Rose, 1998)
AURR980104: Normalized positional residue frequency at helix termini N'(Aurora-Rose, 1998)
AURR980105: Normalized positional residue frequency at helix termini Nc (Aurora-Rose, 1998)
AURR980106: Normalized positional residue frequency at helix termini N1 (Aurora-Rose, 1998)
AURR980107: Normalized positional residue frequency at helix termini N2 (Aurora-Rose, 1998)
AURR980108: Normalized positional residue frequency at helix termini N3 (Aurora-Rose, 1998)
AURR980109: Normalized positional residue frequency at helix termini N4 (Aurora-Rose, 1998)
AURR980110: Normalized positional residue frequency at helix termini N5 (Aurora-Rose, 1998)
AURR980111: Normalized positional residue frequency at helix termini C5 (Aurora-Rose, 1998)
AURR980112: Normalized positional residue frequency at helix termini C4 (Aurora-Rose, 1998)
AURR980113: Normalized positional residue frequency at helix termini C3 (Aurora-Rose, 1998)
AURR980114: Normalized positional residue frequency at helix termini C2 (Aurora-Rose, 1998)
AURR980115: Normalized positional residue frequency at helix termini C1 (Aurora-Rose, 1998)
AURR980116: Normalized positional residue frequency at helix termini Cc (Aurora-Rose, 1998)
AURR980117: Normalized positional residue frequency at helix termini C' (Aurora-Rose, 1998)
AURR980118: Normalized positional residue frequency at helix termini C" (Aurora-Rose, 1998)
AURR980119: Normalized positional residue frequency at helix termini C"' (Aurora-Rose, 1998)
AURR980120: Normalized positional residue frequency at helix termini C4' (Aurora-Rose, 1998)
ONEK900101: Delta G values for the peptides extrapolated to 0 M urea (O'Neil-DeGrado, 1990)
ONEK900102: Helix formation parameters (delta delta G) (O'Neil-DeGrado, 1990)
VINM940101: Normalized flexibility parameters (B-values), average (Vihinen et al., 1994)
VINM940102: Normalized flexibility parameters (B-values) for each residue surrounded by none rigid neighbours (Vihinen et al., 1994)
VINM940103: Normalized flexibility parameters (B-values) for each residue surrounded by one rigid neighbours (Vihinen et al., 1994)
VINM940104: Normalized flexibility parameters (B-values) for each residue surrounded by two rigid neighbours (Vihinen et al., 1994)
MUNV940101: Free energy in alpha-helical conformation (Munoz-Serrano, 1994)
MUNV940102: Free energy in alpha-helical region (Munoz-Serrano, 1994)
MUNV940103: Free energy in beta-strand conformation (Munoz-Serrano, 1994)
MUNV940104: Free energy in beta-strand region (Munoz-Serrano, 1994)
MUNV940105: Free energy in beta-strand region (Munoz-Serrano, 1994)
WIMW960101: Free energies of transfer of AcWl-X-LL peptides from bilayer interface to water (Wimley-White, 1996)
KIMC930101: Thermodynamic beta sheet propensity (Kim-Berg, 1993)
MONM990101: Turn propensity scale for transmembrane helices (Monne et al., 1999)
BLAM930101: Alpha helix propensity of position 44 in T4 lysozyme (Blaber et al., 1993)
PARS000101: p-Values of mesophilic proteins based on the distributions of B values (Parthasarathy-Murthy, 2000)
PARS000102: p-Values of thermophilic proteins based on the distributions of B values (Parthasarathy-Murthy, 2000)
KUMS000101: Distribution of amino acid residues in the 18 non-redundant families of thermophilic proteins (Kumar et al., 2000)
KUMS000102: Distribution of amino acid residues in the 18 non-redundant families of mesophilic proteins (Kumar et al., 2000)
KUMS000103: Distribution of amino acid residues in the alpha-helices in thermophilic proteins (Kumar et al., 2000)
KUMS000104: Distribution of amino acid residues in the alpha-helices in mesophilic proteins (Kumar et al., 2000)
TAKK010101: Side-chain contribution to protein stability (kJ/mol) (Takano-Yutani, 2001)
FODM020101: Propensity of amino acids within pi-helices (Fodje-Al-Karadaghi, 2002)
NADH010101: Hydropathy scale based on self-information values in the two-state model (5% accessibility) (Naderi-Manesh et al., 2001)
NADH010102: Hydropathy scale based on self-information values in the two-state model (9% accessibility) (Naderi-Manesh et al., 2001)
NADH010103: Hydropathy scale based on self-information values in the two-state model (16% accessibility) (Naderi-Manesh et al., 2001)
NADH010104: Hydropathy scale based on self-information values in the two-state model (20% accessibility) (Naderi-Manesh et al., 2001)
NADH010105: Hydropathy scale based on self-information values in the two-state model (25% accessibility) (Naderi-Manesh et al., 2001)
NADH010106: Hydropathy scale based on self-information values in the two-state model (36% accessibility) (Naderi-Manesh et al., 2001)
NADH010107: Hydropathy scale based on self-information values in the two-state model (50% accessibility) (Naderi-Manesh et al., 2001)
MONM990201: Averaged turn propensities in a transmembrane helix (Monne et al., 1999)
KOEP990101: Alpha-helix propensity derived from designed sequences (Koehl-Levitt, 1999)
KOEP990102: Beta-sheet propensity derived from designed sequences (Koehl-Levitt, 1999)
CEDJ970101: Composition of amino acids in extracellular proteins (percent) (Cedano et al., 1997)
CEDJ970102: Composition of amino acids in anchored proteins (percent) (Cedano et al., 1997)
CEDJ970103: Composition of amino acids in membrane proteins (percent) (Cedano et al., 1997)
CEDJ970104: Composition of amino acids in intracellular proteins (percent) (Cedano et al., 1997)
CEDJ970105: Composition of amino acids in nuclear proteins (percent) (Cedano et al., 1997)
FUKS010101: Surface composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010102: Surface composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010103: Surface composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010104: Surface composition of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)
FUKS010105: Interior composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010106: Interior composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010107: Interior composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010108: Interior composition of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)
FUKS010109: Entire chain composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010110: Entire chain composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010111: Entire chain composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)
FUKS010112: Entire chain compositino of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)
AVBF000101: Screening coefficients gamma, local (Avbelj, 2000)
AVBF000102: Screening coefficients gamma, non-local (Avbelj, 2000)
AVBF000103: Slopes tripeptide, FDPB VFF neutral (Avbelj, 2000)
AVBF000104: Slopes tripeptides, LD VFF neutral (Avbelj, 2000)
AVBF000105: Slopes tripeptide, FDPB VFF noside (Avbelj, 2000)
AVBF000106: Slopes tripeptide FDPB VFF all (Avbelj, 2000)
AVBF000107: Slopes tripeptide FDPB PARSE neutral (Avbelj, 2000)
AVBF000108: Slopes dekapeptide, FDPB VFF neutral (Avbelj, 2000)
AVBF000109: Slopes proteins, FDPB VFF neutral (Avbelj, 2000)
YANJ020101: Side-chain conformation by gaussian evolutionary method (Yang et al., 2002)
MITS020101: Amphiphilicity index (Mitaku et al., 2002)
TSAJ990101: Volumes including the crystallographic waters using the ProtOr (Tsai et al., 1999)
TSAJ990102: Volumes not including the crystallographic waters using the ProtOr (Tsai et al., 1999)
COSI940101: Electron-ion interaction potential values (Cosic, 1994)
PONP930101: Hydrophobicity scales (Ponnuswamy, 1993)
WILM950101: Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)
WILM950102: Hydrophobicity coefficient in RP-HPLC, C8 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)
WILM950103: Hydrophobicity coefficient in RP-HPLC, C4 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)
WILM950104: Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2O (Wilce et al. 1995)
KUHL950101: Hydrophilicity scale (Kuhn et al., 1995)
GUOD860101: Retention coefficient at pH 2 (Guo et al., 1986)
JURD980101: Modified Kyte-Doolittle hydrophobicity scale (Juretic et al., 1998)
BASU050101: Interactivity scale obtained from the contact matrix (Bastolla et al., 2005)
BASU050102: Interactivity scale obtained by maximizing the mean of correlation coefficient over single-domain globular proteins (Bastolla et al., 2005)
BASU050103: Interactivity scale obtained by maximizing the mean of correlation coefficient over pairs of sequences sharing the TIM barrel fold (Bastolla et al., 2005)
SUYM030101: Linker propensity index (Suyama-Ohara, 2003)
PUNT030101: Knowledge-based membrane-propensity scale from 1D_Helix in MPtopo databases (Punta-Maritan, 2003)
PUNT030102: Knowledge-based membrane-propensity scale from 3D_Helix in MPtopo databases (Punta-Maritan, 2003)
GEOR030101: Linker propensity from all dataset (George-Heringa, 2003)
GEOR030102: Linker propensity from 1-linker dataset (George-Heringa, 2003)
GEOR030103: Linker propensity from 2-linker dataset (George-Heringa, 2003)
GEOR030104: Linker propensity from 3-linker dataset (George-Heringa, 2003)
GEOR030105: Linker propensity from small dataset (linker length is less than six residues) (George-Heringa, 2003)
GEOR030106: Linker propensity from medium dataset (linker length is between six and 14 residues) (George-Heringa, 2003)
GEOR030107: Linker propensity from long dataset (linker length is greater than 14 residues) (George-Heringa, 2003)
GEOR030108: Linker propensity from helical (annotated by DSSP) dataset (George-Heringa, 2003)
GEOR030109: Linker propensity from non-helical (annotated by DSSP) dataset (George-Heringa, 2003)
ZHOH040101: The stability scale from the knowledge-based atom-atom potential (Zhou-Zhou, 2004)
ZHOH040102: The relative stability scale extracted from mutation experiments (Zhou-Zhou, 2004)
ZHOH040103: Buriability (Zhou-Zhou, 2004)
BAEK050101: Linker index (Bae et al., 2005)
HARY940101: Mean volumes of residues buried in protein interiors (Harpaz et al., 1994)
PONJ960101: Average volumes of residues (Pontius et al., 1996)
DIGM050101: Hydrostatic pressure asymmetry index, PAI (Di Giulio, 2005)
WOLR790101: Hydrophobicity index (Wolfenden et al., 1979)
OLSK800101: Average internal preferences (Olsen, 1980)
KIDA850101: Hydrophobicity-related index (Kidera et al., 1985)
GUYH850102: Apparent partition energies calculated from Wertz-Scheraga index (Guy, 1985)
GUYH850103: Apparent partition energies calculated from Robson-Osguthorpe index (Guy, 1985)
GUYH850104: Apparent partition energies calculated from Janin index (Guy, 1985)
GUYH850105: Apparent partition energies calculated from Chothia index (Guy, 1985)
ROSM880104: Hydropathies of amino acid side chains, neutral form (Roseman, 1988)
ROSM880105: Hydropathies of amino acid side chains, pi-values in pH 7.0 (Roseman, 1988)
JACR890101: Weights from the IFH scale (Jacobs-White, 1989)
COWR900101: Hydrophobicity index, 3.0 pH (Cowan-Whittaker, 1990)
BLAS910101: Scaled side chain hydrophobicity values (Black-Mould, 1991)
CASG920101: Hydrophobicity scale from native protein structures (Casari-Sippl, 1992)
CORJ870101: NNEIG index (Cornette et al., 1987)
CORJ870102: SWEIG index (Cornette et al., 1987)
CORJ870103: PRIFT index (Cornette et al., 1987)
CORJ870104: PRILS index (Cornette et al., 1987)
CORJ870105: ALTFT index (Cornette et al., 1987)
CORJ870106: ALTLS index (Cornette et al., 1987)
CORJ870107: TOTFT index (Cornette et al., 1987)
CORJ870108: TOTLS index (Cornette et al., 1987)
MIYS990101: Relative partition energies derived by the Bethe approximation (Miyazawa-Jernigan, 1999)
MIYS990102: Optimized relative partition energies - method A (Miyazawa-Jernigan, 1999)
MIYS990103: Optimized relative partition energies - method B (Miyazawa-Jernigan, 1999)
MIYS990104: Optimized relative partition energies - method C (Miyazawa-Jernigan, 1999)
MIYS990105: Optimized relative partition energies - method D (Miyazawa-Jernigan, 1999)
ENGD860101: Hydrophobicity index (Engelman et al., 1986)
FASG890101: Hydrophobicity index (Fasman, 1989)
K6.5: Values of Wc in proteins from class Beta, cutoff 6 A, separation 5 (Wozniak, 2014)
K8.5: Values of Wc in proteins from class Beta, cutoff 8 A, separation 5 (Wozniak, 2014)
K12.5: Values of Wc in proteins from class Beta, cutoff 12 A, separation 5 (Wozniak, 2014)
K6.15: Values of Wc in proteins from class Beta, cutoff 6 A, separation 15 (Wozniak, 2014)
K8.15: Values of Wc in proteins from class Beta, cutoff 8 A, separation 15 (Wozniak, 2014)
K12.15: Values of Wc in proteins from class Beta, cutoff 12 A, separation 15 (Wozniak, 2014)

Source

AAIndex database.

References

Kawashima, S. and Kanehisa, M. (2000) AAindex: amino acid index database. Nucleic Acids Res., 28:374.

Wozniak, P. and Kotulska M. (2014) Characteristics of protein residue-residue contacts and their application in contact prediction. 20(11):2497

Examples

data(aaprop)

[Package biogram version 1.6.3 Index]