vec2resno {bio3d} | R Documentation |
Replicate Per-residue Vector Values
Description
Replicate values in one vector based on consecutive entries in a second vector. Useful for adding per-residue data to all-atom PDB files.
Usage
vec2resno(vec, resno)
Arguments
vec |
a vector of values to be replicated. |
resno |
a reference vector or a PDB structure object, obtained
from |
Details
This function can aid in mapping data to PDB structure files. For example, residue conservation per position (or any other one value per residue data) can be replicated to fit the B-factor field of an all atom PDB file which can then be rendered according to this field in a molecular viewer.
A basic check is made to ensure that the number of consecutively unique entries in the reference vector equals the length of the vector to be replicated.
Value
Returns a vector of replicated values.
Author(s)
Barry Grant
References
Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.
See Also
read.pdb
, atom.select
,
write.pdb
Examples
vec2resno(c("a","b"), c(1,1,1,1,2,2))