plot.pca.loadings {bio3d} | R Documentation |
Plot Residue Loadings along PC1 to PC3
Description
Plot residue loadings along PC1 to PC3 from a given xyz C-alpha matrix
of loadings
.
Usage
## S3 method for class 'pca.loadings'
plot(x, resnums = seq(1, (length(x[, 1])/3), 25), ...)
Arguments
x |
the results of principal component analysis obtained
from |
resnums |
a numeric vector of residue numbers. |
... |
extra plotting arguments. |
Value
Called for its effect.
Author(s)
Barry Grant
References
Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.
See Also
Examples
attach(transducin)
pc.xray <- pca.xyz(pdbs$xyz[, gap.inspect(pdbs$xyz)$f.inds])
plot.pca.loadings(pc.xray$U)
detach(transducin)
[Package bio3d version 2.4-4 Index]