plotMDS {bingat} | R Documentation |
Plot MDS
Description
This function plots all the data on an MDS plot.
Usage
plotMDS(dataList, groups, estGstar = TRUE, paired = FALSE,
returnCoords = FALSE, ..., data=NULL)
Arguments
dataList |
A list where each element is a data frame in which the columns (subjects) contain a 0/1 value for row (Node or Edge). |
groups |
Deprecated. Each data set should be an element in dataList. |
estGstar |
When TRUE, the g star for every group is calculated and plotted. |
paired |
When TRUE, line segments between pairs will be drawn. |
returnCoords |
When TRUE, the MDS x-y coordinates will be returned. |
... |
Arguments to be passed to the plot method. |
data |
Deprecated. Replaced with dataList for clarity. |
Value
An MDS plot and if returnCoords is TRUE, a 2 column data frame containing the x-y coordinates of the data points is also returned.
Author(s)
Berkley Shands, Elena Deych, William D. Shannon
Examples
data(braingraphs)
### Break our data into two groups
dataList <- list(braingraphs[,1:19], braingraphs[,20:38])
### Basic plot
plotMDS(dataList, main="MDS Plot")
### Paired Plot
plotMDS(dataList, paired=TRUE, main="Paired MDS Plot")
[Package bingat version 1.3 Index]