bigsnpr-package {bigsnpr} | R Documentation |
bigsnpr: Analysis of Massive SNP Arrays
Description
Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) doi:10.1093/bioinformatics/bty185.
Arguments
G |
A FBM.code256
(typically |
Gna |
A FBM.code256
(typically |
x |
A bigSNP. |
infos.chr |
Vector of integers specifying each SNP's chromosome. |
infos.pos |
Vector of integers specifying the physical position
on a chromosome (in base pairs) of each SNP. |
nploidy |
Number of trials, parameter of the binomial distribution.
Default is |
ind.row |
An optional vector of the row indices (individuals) that
are used. If not specified, all rows are used. |
ind.col |
An optional vector of the column indices (SNPs) that are used.
If not specified, all columns are used. |
ncores |
Number of cores used. Default doesn't use parallelism. You may use nb_cores. |
is.size.in.bp |
Deprecated. |
obj.bed |
Object of type bed, which is the mapping of some bed file.
Use |
Author(s)
Maintainer: Florian Privé florian.prive.21@gmail.com
Other contributors:
Michael Blum [thesis advisor]
Hugues Aschard hugues.aschard@pasteur.fr [thesis advisor]
Bjarni Jóhann Vilhjálmsson bjv@econ.au.dk [thesis advisor]
See Also
Useful links: