| getScaffoldsWithThisType {bexy} | R Documentation |
Getting all scaffolds classified as a specific scaffold type
Description
Getting all scaffolds classified as a specific scaffold type
Usage
getScaffoldsWithThisType(object, type, threshold_certainty = 0.9)
Arguments
object |
A bexy object. |
type |
One specific scaffold type, can be Autosome, Y-linked, X-linked or Different. |
threshold_certainty |
The threshold for certainty on the posterior probabilities. All scaffolds that have a posterior probability less than this threshold are classified as 'uncertain'. |
Value
A character vector containing all scaffold names that are classified as the scaffold type given by argument 'type'.
See Also
Examples
bex <- bexy()
getScaffoldsWithThisType(bex, "X-linked")
[Package bexy version 0.1.2 Index]