getSamplesWithAutosomalTrisomy {bexy}

Getting all samples classified as a certain autosomal trisomy

Description

Getting all samples classified as a certain autosomal trisomy

Usage

getSamplesWithAutosomalTrisomy(object, scaffoldName, threshold_certainty = 0.9)

Arguments

object

A bexy object.

scaffoldName

The scaffold name, must be an autosome.

threshold_certainty

The threshold for certainty on the posterior probabilities. All samples that have a posterior probability less than this threshold are classified as 'uncertain'.

Value

A character vector containing all sample names that are classified as having an autosomal trisomy of scaffold 'scaffoldName'

See Also

bexy

Examples

bex <- bexy()
getSamplesWithAutosomalTrisomy(bex, "21")