download.datasets {bedr} | R Documentation |
Download some useful datasets
Description
Download some useful datasets. Some functions such as plotting and fasta querying require additional data.
Usage
download.datasets(datasets = "all", data.dir = paste0(Sys.getenv("HOME"), "/bedr/data"))
Arguments
datasets |
A list of datasets to download. Defaults to "all" i.e. c("refgene","hg19","b37","hugo", "cosmic","clinvar") |
data.dir |
A directory to put the data. Defaults to ~/bedr/data |
Details
External datasets are required for some bedr functionality. For example, plotting intersections based on genes, get.fasta, bed2vcf and validate.gene.names. If these datasets already exist you can simply place symlinks in a directory and use bedr.setup() to define the data.dir.
Value
some datasets.
Author(s)
Daryl Waggott
Examples
## Not run:
download.datasets("cosmic");
## End(Not run)
[Package bedr version 1.0.7 Index]