mrca_priors_to_xml_prior_distr {beautier} | R Documentation |
Creates the the distribution
's prior section (which is part of
a posterior distribution section) of a BEAST2 XML parameter file.
Description
These lines start with '<distribution id="prior"
'
Usage
mrca_priors_to_xml_prior_distr(inference_model)
Arguments
inference_model |
a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model. |
Details
<distribution id="posterior" spec="util.CompoundDistribution">
<distribution id="prior" spec="util.CompoundDistribution">
HERE, where the ID of the distribution is 'prior'
</distribution>
<distribution id="likelihood" ...>
</distribution>
</distribution>
Value
lines of XML text
Author(s)
Richèl J.C. Bilderbeek