R: Initialize the MRCA prior.

init_mrca_prior {beautier}

R Documentation

Initialize the MRCA prior.

Initialized by

if no alignment ID is set, it is set by reading it from the alignment file
if no taxa names are set, these are set by reading these from the alignment file

init_mrca_prior(input_filename, inference_model)

`input_filename`	A FASTA filename. Use `get_fasta_filename` to obtain a testing FASTA filename.
`inference_model`	a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

an initialized MRCA prior

Richèl J.C. Bilderbeek

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