create_tracelog_xml {beautier}

Internal function

Description

Creates the tracelog section of the logger section of a BEAST2 XML parameter file

Usage

create_tracelog_xml(input_filename, inference_model)

Arguments

input_filename

A FASTA filename. Use get_fasta_filename to obtain a testing FASTA filename.

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

lines of XML text

Author(s)

Richèl J.C. Bilderbeek