create_site_model_parameters_xml {beautier} | R Documentation |
Internal function to creates the XML text for the
parameter
s within the siteModel
section
of a BEAST2 parameter file.
Description
Internal function to creates the XML text for the
parameter
s within the siteModel
section,
which is part of the siteModel
section
of a BEAST2 parameter file.
Usage
create_site_model_parameters_xml(inference_model)
Arguments
inference_model |
a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model. |
Details
The parameter
s sections has these elements:
[parameters]
[parameters]
can be a combination of these:
<parameter id="mutationRate.s[...]> <parameter id="gammaShape.s[...]> <parameter id="proportionInvariant.s[...]>
Value
the site model as XML text
Author(s)
Richèl J.C. Bilderbeek
Examples
check_empty_beautier_folder()
[Package beautier version 2.6.12 Index]