create_param {beautier} | R Documentation |
General function to create a parameter.
Description
General function to create a parameter.
Usage
create_param(name, id, value, ...)
Arguments
name |
the parameters' name. Valid
names can be found in |
id |
the parameter's ID |
value |
value of the parameter |
... |
specific parameter parameters |
Value
a parameter
Note
Prefer using the
named functions
create_alpha_param
,
create_beta_param
,
create_clock_rate_param
,
create_kappa_1_param
,
create_kappa_2_param
,
create_lambda_param
,
create_m_param
,
create_mean_param
,
create_mu_param
,
create_rate_ac_param
,
create_rate_ag_param
,
create_rate_at_param
,
create_rate_cg_param
,
create_rate_ct_param
,
create_rate_gt_param
,
create_s_param
,
create_scale_param
,
and create_sigma_param
Author(s)
Richèl J.C. Bilderbeek
Examples
if (is_on_ci()) {
# Create an alpha parameter
alpha_param <- create_alpha_param()
# Use the parameter in a distribution
beta_distr <- create_beta_distr(
alpha = alpha_param
)
# Use the distribution to create a BEAST2 input file
beast2_input_file <- get_beautier_tempfilename()
create_beast2_input_file(
input_filename = get_fasta_filename(),
beast2_input_file,
tree_prior = create_yule_tree_prior(
birth_rate_distr = beta_distr
)
)
file.remove(beast2_input_file)
remove_beautier_folder()
}
[Package beautier version 2.6.12 Index]