create_mu_param {beautier}R Documentation

Create a parameter called mu

Description

Create a parameter called mu

Usage

create_mu_param(id = NA, value = 0)

Arguments

id

the parameter's ID

value

value of the parameter

Value

a parameter called mu

Note

this parameter is used in a Laplace distribution (as returned by create_laplace_distr). It cannot be estimated (as a hyper parameter) yet.

Author(s)

Richèl J.C. Bilderbeek

See Also

the function create_param contains a list of all parameters that can be created

Examples

if (is_on_ci()) {

  # Create the parameter
  mu_param <- create_mu_param()

  # Use the parameter in a distribution
  laplace_distr <- create_laplace_distr(
    mu = mu_param
  )

  # Use the distribution to create a BEAST2 input file
  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = create_yule_tree_prior(
      birth_rate_distr = laplace_distr
    )
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}

[Package beautier version 2.6.11 Index]