create_jc69_site_model {beautier} | R Documentation |
Create a JC69 site model
Description
Create a JC69 site model
Usage
create_jc69_site_model(id = NA, gamma_site_model = create_gamma_site_model())
Arguments
id |
the IDs of the alignment (can be extracted from
the FASTA filename using |
gamma_site_model |
a gamma site model, as created by create_gamma_site_model |
Value
a JC69 site_model
Author(s)
Richèl J.C. Bilderbeek
Examples
if (is_on_ci()) {
jc69_site_model <- create_jc69_site_model()
output_filename <- get_beautier_tempfilename()
create_beast2_input_file(
input_filename = get_fasta_filename(),
output_filename = output_filename,
site_model = jc69_site_model
)
file.remove(output_filename)
remove_beautier_folder()
}
[Package beautier version 2.6.12 Index]