create_beast2_input_distr_lh {beautier} | R Documentation |
Creates the XML text for the distribution
tag
with the likelihood
ID,
of a BEAST2 parameter file.
Description
Creates the XML text for the distribution
tag
with the likelihood
ID,
of a BEAST2 parameter file,
in an unindented form
Usage
create_beast2_input_distr_lh(inference_model)
Arguments
inference_model |
a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model. |
Details
The distribution
tag (with ID equals likelihood
)
has these elements:
<distribution id="likelihood"[...]> <distribution id="treeLikelihood"[...]> [...] </distribution> </distribution>
The distribution
section with ID treeLikelihood
is created by create_tree_likelihood_distr_xml.
Zooming out:
<beast[...]> <run[...]> <distribution id="posterior"[...]> <distribution id="likelihood"[...]> [this section] </distribution> </distribution> </run> </beast>
Value
lines of XML text
Note
this function is not intended for regular use, thus its long name length is accepted
Author(s)
Richèl J.C. Bilderbeek
See Also
this function is called by create_beast2_input_distr
,
together with create_beast2_input_distr_prior