create_bd_tree_prior {beautier} | R Documentation |
Create a Birth-Death tree prior
Description
Create a Birth-Death tree prior
Usage
create_bd_tree_prior(
id = NA,
birth_rate_distr = create_uniform_distr(),
death_rate_distr = create_uniform_distr()
)
Arguments
id |
the ID of the alignment |
birth_rate_distr |
the birth rate distribution,
as created by a |
death_rate_distr |
the death rate distribution,
as created by a |
Value
a Birth-Death tree_prior
Author(s)
Richèl J.C. Bilderbeek
See Also
An alignment ID can be extracted from
its FASTA filename using get_alignment_id
Examples
if (is_on_ci()) {
bd_tree_prior <- create_bd_tree_prior()
beast2_input_file <- get_beautier_tempfilename()
create_beast2_input_file(
input_filename = get_fasta_filename(),
beast2_input_file,
tree_prior = bd_tree_prior
)
file.remove(beast2_input_file)
remove_beautier_folder()
}
[Package beautier version 2.6.12 Index]