create_alpha_param {beautier} | R Documentation |
Create a parameter called alpha
Description
Create a parameter called alpha
Usage
create_alpha_param(id = NA, value = 0)
Arguments
id |
the parameter's ID |
value |
value of the parameter |
Value
a parameter called alpha
Note
this parameter is used in a beta distribution
(as returned by create_beta_distr
)
and gamma distribution
(as returned by create_gamma_distr
)
and inverse-gamma distribution
(as returned by create_inv_gamma_distr
).
It cannot be estimated (as a hyper parameter) yet.
Author(s)
Richèl J.C. Bilderbeek
See Also
the function create_param
contains a list
of all parameters that can be created
Examples
if (is_on_ci()) {
# Create the parameter
alpha_param <- create_alpha_param()
# Use the parameter in a distribution
beta_distr <- create_beta_distr(
alpha = alpha_param
)
# Use the distribution to create a BEAST2 input file
beast2_input_file <- get_beautier_tempfilename()
create_beast2_input_file(
input_filename = get_fasta_filename(),
beast2_input_file,
tree_prior = create_yule_tree_prior(
birth_rate_distr = beta_distr
)
)
file.remove(beast2_input_file)
remove_beautier_folder()
}
[Package beautier version 2.6.12 Index]