beautier-package {beautier} | R Documentation |
beautier
: A package to create a BEAST2
input file.
Description
beautier
allows to create a BEAST2
input file, using
an R interface. beautier
closely follows the interface
of BEAUti 2
, a GUI tool bundled with BEAST2
, including
its default settings.
Details
See the documentation of create_inference_model
to see the
features of BEAST2 that beautier
supports.
Author(s)
Richèl J.C. Bilderbeek
See Also
These are packages associated with beautier
:
-
The package
beastier
can run BEAST2 from R -
The package
tracerer
can parse BEAST2 output files from R -
The package
mauricer
manages BEAST2 packages from R -
The package
babette
combines the functionality ofbeautier
,beastier
,mauricer
andtracerer
into a single workflow
Examples
if (is_on_ci()) {
check_empty_beautier_folder()
# Get an example FASTA file
input_filename <- get_fasta_filename()
# The file created by beautier, a BEAST2 input file
output_filename <- get_beautier_tempfilename()
# Use the default BEAUti settings to create a BEAST2 input file
create_beast2_input_file_from_model(
input_filename,
output_filename,
inference_model = create_inference_model()
)
# Remove the folder that contains the beautier temporary files
remove_beautier_folder()
check_empty_beautier_folder()
}
[Package beautier version 2.6.12 Index]