is_beast2_input_file {beastier}R Documentation

Is a file a valid BEAST2 input file?

Description

Is a file a valid BEAST2 input file?

Usage

is_beast2_input_file(
  filename,
  show_warnings = FALSE,
  verbose = FALSE,
  beast2_path = get_default_beast2_path()
)

Arguments

filename

name of the BEAST2 XML input file

show_warnings

if TRUE, warnings will shown

verbose

if TRUE, additional information is displayed, that is potentially useful in debugging

beast2_path

name of either a BEAST2 binary file (usually simply beast) or a BEAST2 jar file (usually has a .jar extension). Use get_default_beast2_bin_path to get the default BEAST binary file's path Use get_default_beast2_jar_path to get the default BEAST jar file's path

Value

TRUE if the file is valid, FALSE if not

Note

this function only works on standard BEAST2 input files: if a BEAST2 input file is modified to use a certain BEAST2 package, this function will label it as an invalid file

Author(s)

Richèl J.C. Bilderbeek

See Also

Use are_beast2_input_lines to check the lines

Examples


if (is_beast2_installed() && is_on_ci()) {

  filename <- get_beastier_path("anthus_2_4.xml")
  # TRUE, this is a BEAST2 input file
  is_beast2_input_file(filename)

  filename <- get_beastier_path("beast2_example_output.log")
  # FALSE, this is not a BEAST2 input file,
  # it is a BEAST2 output log file insteaf
  is_beast2_input_file(filename)
}

[Package beastier version 2.4.8 Index]