Projected t-SNE for Batch Correction

[Up] [Top]

Documentation for package ‘bcTSNE’ version 0.10.0

Help Pages

apat A + t(A)
bctsne Calculate BC t-SNE by orthogonal gradient descent
calcPvals Calculate t-SNE p-values based on a distance matrix
grad Calculate t-SNE gradient
ols Ordinary least squares, solves B = AX for X.
sqdist Calculate squared Euclidean distance
ssx Sum of squares
zeroMean Subtract the column means from X