bird_sample |
Sample point count data per species (Pacific Wren only) |
fetch_bbs_data |
Fetch Breeding Bird Survey dataset |
generate_indices |
Generate regional annual indices of abundance continent and strata and optionally for countries, states/provinces, or BCRs from analyses run on the stratifications that support these composite regions |
generate_map |
Generate a map of trends by strata. |
generate_trends |
Generate regional trends continent and strata and optionally for countries, states/provinces, or BCRs from analyses run on the stratifications that support these composite regions |
geofacet_plot |
Generate a geofacet plot of population trajectories by province/state |
get_composite_regions |
Get the area of each strata |
get_final_values |
Get final values of JAGS model |
get_mcmc_list |
Obtain MCMC list from jagsUI object |
get_prepared_data |
Get the prepared species dataset used for JAGS |
get_strata_area |
Get the area of each strata |
load_bbs_data |
Load Breeding Bird Survey dataset into R Session |
load_map |
Load a map of of the geographic strata. |
load_sample_data |
Load Sample Breeding Bird Survey dataset into R Session |
lppd |
Calculate log posterior predictive density |
model_to_file |
Save model to text file |
plot_indices |
Generate plots of index trajectories by stratum |
prepare_data |
Wrangle data to use for modelling input |
route_sample |
Sample route data per year run (Pacific Wren only) |
run_model |
Run JAGS model for prepared species data |
r_hat |
Generate Gelman-Rubin's R-Hat statistic |
species_sample |
Sample North American bird species list (Pacific Wren only) |
stratify |
Stratify raw Breeding Bird Survey data |