Hierarchical Bayesian Analysis of North American BBS Data

---

Documentation for package ‘bbsBayes’ version 2.5.3

• DESCRIPTION file.

Help Pages

bird_sample	Sample point count data per species (Pacific Wren only)
fetch_bbs_data	Fetch Breeding Bird Survey dataset
generate_indices	Generate regional annual indices of abundance continent and strata and optionally for countries, states/provinces, or BCRs from analyses run on the stratifications that support these composite regions
generate_map	Generate a map of trends by strata.
generate_trends	Generate regional trends continent and strata and optionally for countries, states/provinces, or BCRs from analyses run on the stratifications that support these composite regions
geofacet_plot	Generate a geofacet plot of population trajectories by province/state
get_composite_regions	Get the area of each strata
get_final_values	Get final values of JAGS model
get_mcmc_list	Obtain MCMC list from jagsUI object
get_prepared_data	Get the prepared species dataset used for JAGS
get_strata_area	Get the area of each strata
load_bbs_data	Load Breeding Bird Survey dataset into R Session
load_map	Load a map of of the geographic strata.
load_sample_data	Load Sample Breeding Bird Survey dataset into R Session
lppd	Calculate log posterior predictive density
model_to_file	Save model to text file
plot_indices	Generate plots of index trajectories by stratum
prepare_data	Wrangle data to use for modelling input
route_sample	Sample route data per year run (Pacific Wren only)
run_model	Run JAGS model for prepared species data
r_hat	Generate Gelman-Rubin's R-Hat statistic
species_sample	Sample North American bird species list (Pacific Wren only)
stratify	Stratify raw Breeding Bird Survey data