tfr.trajectories.plot {bayesTFR} | R Documentation |

## Output of Posterior Distribution of TFR Trajectories

### Description

The functions plot/tabulate the posterior distribution of TFR trajectories for a given country, or for all countries, including their median and given probability intervals.

### Usage

```
tfr.trajectories.plot(tfr.pred, country, pi = c(80, 95),
half.child.variant = TRUE, nr.traj = NULL,
adjusted.only = TRUE, typical.trajectory = FALSE,
mark.estimation.points = FALSE,
xlim = NULL, ylim = NULL, type = 'b', xlab = 'Year', ylab = 'TFR',
main = NULL, lwd = c(2, 2, 2, 2, 2, 1),
col=c('black', 'green', 'red', 'red', 'blue', '#00000020'),
show.legend = TRUE, add = FALSE, uncertainty = FALSE,
col_unc = "purple", ...)
tfr.trajectories.plot.all(tfr.pred,
output.dir = file.path(getwd(), 'TFRtrajectories'),
output.type = "png", main = NULL, verbose = FALSE, ...)
tfr.trajectories.table(tfr.pred, country, pi = c(80, 95),
half.child.variant = TRUE, adjusted = TRUE)
```

### Arguments

`tfr.pred` |
Object of class |

`country` |
Name or numerical code of a country. It can also be given as ISO-2 or ISO-3 characters. |

`pi` |
Probability interval. It can be a single number or an array. |

`half.child.variant` |
If |

`nr.traj` |
Number of trajectories to be plotted. If |

`adjusted.only` |
Logical. By default, if the projection or estimation median is adjusted using e.g. |

`typical.trajectory` |
Logical. If |

`mark.estimation.points` |
Logical. If |

`xlim` , `ylim` , `type` , `xlab` , `ylab` |
Graphical parameters passed to the |

`lwd` , `col` |
Vector of six elements giving the line width and color for: 1. observed data, 2. imputed missing data, 3. median, 4. quantiles, 5. half-child variant, 6. trajectories. |

`show.legend` |
Logical controlling whether the legend should be drawn. |

`add` |
Logical controlling whether the trajectories should be plotted into a new graphic device ( |

`...` |
Additional graphical parameters. In addition, for |

`output.dir` |
Directory into which resulting graphs are stored. |

`output.type` |
Type of the resulting files. It can be “png”, “pdf”, “jpeg”, “bmp”, “tiff”, or “postscript”. |

`main` |
Main title for the plot(s). In |

`verbose` |
Logical switching log messages on and off. |

`uncertainty` |
Logical: |

`col_unc` |
Color of past TFR estimation uncertainty plot. |

`adjusted` |
Logical. If |

### Details

`tfr.trajectories.plot`

plots posterior distribution of TFR trajectories for a given country. `tfr.trajectories.table`

gives the same output as a table. `tfr.trajectories.plot.all`

creates a set of graphs (one per country) that are stored in `output.dir`

.

The median and given probability intervals are computed using all available trajectories. Thus, `nr.traj`

does not influence those values - it is used only to control the number of trajectories plotted.

### Author(s)

Hana Sevcikova, Leontine Alkema, Peiran Liu

### See Also

### Examples

```
## Not run:
sim.dir <- file.path(find.package("bayesTFR"), "ex-data", "bayesTFR.output")
pred <- get.tfr.prediction(sim.dir)
tfr.trajectories.plot(pred, country="Burkina Faso", pi=c(80, 95))
tfr.trajectories.table(pred, country="Burkina Faso", pi=c(80, 95))
## End(Not run)
```

*bayesTFR*version 7.4-2 Index]