tfr.trajectories.plot {bayesTFR} | R Documentation |

The functions plot/tabulate the posterior distribution of TFR trajectories for a given country, or for all countries, including their median and given probability intervals.

tfr.trajectories.plot(tfr.pred, country, pi = c(80, 95), half.child.variant = TRUE, nr.traj = NULL, adjusted.only = TRUE, typical.trajectory = FALSE, mark.estimation.points = FALSE, xlim = NULL, ylim = NULL, type = 'b', xlab = 'Year', ylab = 'TFR', main = NULL, lwd = c(2, 2, 2, 2, 2, 1), col=c('black', 'green', 'red', 'red', 'blue', '#00000020'), show.legend = TRUE, add = FALSE, uncertainty = FALSE, thin = NULL, burnin = NULL, col_unc = "purple", ...) tfr.trajectories.plot.all(tfr.pred, output.dir = file.path(getwd(), 'TFRtrajectories'), output.type = "png", main = NULL, verbose = FALSE, ...) tfr.trajectories.table(tfr.pred, country, pi = c(80, 95), half.child.variant = TRUE)

`tfr.pred` |
Object of class |

`country` |
Name or numerical code of a country. |

`pi` |
Probability interval. It can be a single number or an array. |

`half.child.variant` |
If |

`nr.traj` |
Number of trajectories to be plotted. If |

`adjusted.only` |
Logical. By default, if the projection median is adjusted using e.g. |

`typical.trajectory` |
Logical. If |

`mark.estimation.points` |
Logical. If |

`xlim, ylim, type, xlab, ylab` |
Graphical parameters passed to the |

`lwd, col` |
Vector of six elements giving the line width and color for: 1. observed data, 2. imputed missing data, 3. median, 4. quantiles, 5. half-child variant, 6. trajectories. |

`show.legend` |
Logical controlling whether the legend should be drawn. |

`add` |
Logical controlling whether the trajectories should be plotted into a new graphic device ( |

`...` |
Additional graphical parameters. In addition, for |

`output.dir` |
Directory into which resulting graphs are stored. |

`output.type` |
Type of the resulting files. It can be “png”, “pdf”, “jpeg”, “bmp”, “tiff”, or “postscript”. |

`main` |
Main title for the plot(s). In |

`verbose` |
Logical switching log messages on and off. |

`uncertainty` |
Logical: |

`thin` |
Thinning for past TFR estimation. |

`burnin` |
Burn-in for past TFR estimation. |

`col_unc` |
Color of past TFR estimation uncertainty plot. |

`tfr.trajectories.plot`

plots posterior distribution of TFR trajectories for a given country. `tfr.trajectories.table`

gives the same output as a table. `tfr.trajectories.plot.all`

creates a set of graphs (one per country) that are stored in `output.dir`

.

The median and given probability intervals are computed using all available trajectories. Thus, `nr.traj`

does not influence those values - it is used only to control the number of trajectories plotted.

Hana Sevcikova, Leontine Alkema

## Not run: sim.dir <- file.path(find.package("bayesTFR"), "ex-data", "bayesTFR.output") pred <- get.tfr.prediction(sim.dir) tfr.trajectories.plot(pred, country="Burkina Faso", pi=c(80, 95)) tfr.trajectories.table(pred, country="Burkina Faso", pi=c(80, 95)) ## End(Not run)

[Package *bayesTFR* version 7.0-5 Index]