plotTrace {bayMDS} | R Documentation |
trace plots of MCMC samples
Description
plot trace plots of MCMC samples of parameters for visual inspection of MCMC convergence
Usage
plotTrace(out, para = c("del"), linecolor = "blue", ...)
Arguments
out |
the output of the function |
para |
names of the parameters for trace plots. It should be any subvector of c("del","sigma", "lambda") (default=c("del")) |
linecolor |
line color. The default color is blue. |
... |
arguments to be passed to methods |
Details
Notes
If "del" is in para, trace plots of the Euclidean distances from 4 randomly selected pairs will be given
If "lambda" is in para, trace plots of the first four elements of Lambda, the diagonal prior variance of objects, will be given
If "sigma" is in para, trace plot and ACF(Auto Correlation Function) plot of sigma, the errorvariance will be given
Value
trace plots of delta, sigma and lambda
Examples
data(cityDIST)
result <- bmdsMCMC(cityDIST,p=3,nwarm=1000,niter=2000)
plotTrace(result,para=c("del","sigma", "lambda"))
[Package bayMDS version 2.0 Index]