babsimToolsConf {babsim.hospital} | R Documentation |
babsimToolsConf
Description
Default configuration list for babsimTools.
This function returns the default configuration settings of the babsimTools functions
used to run babsimHospital
.
Configuration conf
is a list of the following settings.
seed
(int) Initial seed. Default: 123
simRepeats
(int) Number of
simmer
simulation runs. Default: 1parallel
(logical) Use parallel simulations based on
mclapply
. Default: FALSEperCores
(num) Percentage of cores used, if
parallel == TRUE
. Default: 0.5ICU
(logical) Use ICU (RKI) data. Default: FALSE.
logLevel
(int) 0 = no logging, >= 1 logging. Default: 0. If larger than 10, shown detailed simmer output.
maxCapacity
(num) Maximum capacity used for
babsimHospital
resources. Default: 1e6.dataset
(chr) "GA" or "ICU". Default: "GA".
simulationDates
List with the following entries:
StartDate
(chr) Start date of the simulation data (infection data used to generate arrival times), first day. Default: "2020-03-03"
EndDate
(chr) End date of the simulation data, last day. Default: "2020-06-24"
fieldDates
List with the following entries:
StartDate
(chr) Start date of the field (resources) data, first day. Default: "2020-03-03"
EndDate
(chr) End date of the field data, last day. Default: "2020-06-24"
simulationData
(data frame) Data used for the simulation. Default
dataCovidBeds20200624
- bed
int 2 2 3 3 3 3 3 3 4 4 ...
- intensiveBed
int 0 0 0 0 0 0 0 0 0 0 ...
- intensiveBedVentilation
int 0 0 0 0 0 0 0 0 0 0 ...
- Day
Date, format: "2020-03-03" "2020-03-04" "2020-03-05" "2020-03-06" ...
- Infected
num 5 0 0 0 0 0 0 7 2 5 ...
- Sick
num 5 5 5 5 5 5 5 12 14 19 ...
fieldEvents
(data frame) Data used for evalution of the simulation. Default
GABeds220200624
- ressource
chr "bed" "bed" "bed" "bed" ...
- time
int 1 2 3 4 5 6 7 8 9 10 ...
- med
int 2 2 3 3 3 3 3 3 4 4 ...
- source
int 2 2 3 3 3 3 3 3 4 4 ...
- date
Date, format: "2020-03-03" "2020-03-04" "2020-03-05" "2020-03-06" ...
resource
(vector) Resources used in the simulation. Default:
c("bed", "intensiveBed", "intensiveBedVentilation")
. For ICU data use:c("bed", "intensiveBedVentilation")
- ressource
chr "bed" "bed" "bed" "bed" ...
- time
int 1 2 3 4 5 6 7 8 9 10 ...
- med
int 2 2 3 3 3 3 3 3 4 4 ...
- source
int 2 2 3 3 3 3 3 3 4 4 ...
- date
Date, format: "2020-03-03" "2020-03-04" "2020-03-05" "2020-03-06" ...
Usage
babsimToolsConf()
Value
a list
Examples
# turn on parallel simulation:
conf <- babsimToolsConf()
conf$parallel <- TRUE
conf$simulationDates$StartDate <- "2020-01-01"