babsimToolsConf {babsim.hospital}R Documentation

babsimToolsConf

Description

Default configuration list for babsimTools. This function returns the default configuration settings of the babsimTools functions used to run babsimHospital. Configuration conf is a list of the following settings.

seed

(int) Initial seed. Default: 123

simRepeats

(int) Number of simmer simulation runs. Default: 1

parallel

(logical) Use parallel simulations based on mclapply. Default: FALSE

perCores

(num) Percentage of cores used, if parallel == TRUE. Default: 0.5

ICU

(logical) Use ICU (RKI) data. Default: FALSE.

logLevel

(int) 0 = no logging, >= 1 logging. Default: 0. If larger than 10, shown detailed simmer output.

maxCapacity

(num) Maximum capacity used for babsimHospital resources. Default: 1e6.

dataset

(chr) "GA" or "ICU". Default: "GA".

simulationDates

List with the following entries:

StartDate

(chr) Start date of the simulation data (infection data used to generate arrival times), first day. Default: "2020-03-03"

EndDate

(chr) End date of the simulation data, last day. Default: "2020-06-24"

fieldDates

List with the following entries:

StartDate

(chr) Start date of the field (resources) data, first day. Default: "2020-03-03"

EndDate

(chr) End date of the field data, last day. Default: "2020-06-24"

simulationData

(data frame) Data used for the simulation. Default dataCovidBeds20200624

bed

int 2 2 3 3 3 3 3 3 4 4 ...

intensiveBed

int 0 0 0 0 0 0 0 0 0 0 ...

intensiveBedVentilation

int 0 0 0 0 0 0 0 0 0 0 ...

Day

Date, format: "2020-03-03" "2020-03-04" "2020-03-05" "2020-03-06" ...

Infected

num 5 0 0 0 0 0 0 7 2 5 ...

Sick

num 5 5 5 5 5 5 5 12 14 19 ...

fieldEvents

(data frame) Data used for evalution of the simulation. Default GABeds220200624

ressource

chr "bed" "bed" "bed" "bed" ...

time

int 1 2 3 4 5 6 7 8 9 10 ...

med

int 2 2 3 3 3 3 3 3 4 4 ...

source

int 2 2 3 3 3 3 3 3 4 4 ...

date

Date, format: "2020-03-03" "2020-03-04" "2020-03-05" "2020-03-06" ...

resource

(vector) Resources used in the simulation. Default: c("bed", "intensiveBed", "intensiveBedVentilation"). For ICU data use: c("bed", "intensiveBedVentilation")

ressource

chr "bed" "bed" "bed" "bed" ...

time

int 1 2 3 4 5 6 7 8 9 10 ...

med

int 2 2 3 3 3 3 3 3 4 4 ...

source

int 2 2 3 3 3 3 3 3 4 4 ...

date

Date, format: "2020-03-03" "2020-03-04" "2020-03-05" "2020-03-06" ...

Usage

babsimToolsConf()

Value

a list

Examples


# turn on parallel simulation:
conf <- babsimToolsConf()
conf$parallel <- TRUE
conf$simulationDates$StartDate <- "2020-01-01"

[Package babsim.hospital version 11.8.4 Index]