babsimHospitalPara {babsim.hospital} | R Documentation |
babsimHospitalPara
Description
Default Control list for babsimHospital
This function returns the default controls for the functions babsimHospital
.
Control is a list of the following settings.
Note: dependent parameters that are based on other parameters (e.g., probabilities that add to 1.0) are marked with an asterisk (*).
Note: parameters that are currently not used, are marked with a double asterisk (**).
logLevel
if larger than 10, shown detailed simmer output. simmer
log_
level, default is0
.
1
FactorPatientsInfectedToHealthy*
Z1: Infected -> Healthy: percentage of patients that move from state infected to healthy, default is
0.831
. Note: not used. Value is internally calculated as:1 - FactorPatientsInfectedToHospital
AmntDaysInfectedToHealthy**
Z1: Infected -> Healthy: duration (in days) if patients move from state infected to healthy, default is
20.5
. Note: not used, because not modeled.
2
FactorPatientsInfectedToHospital
Z2: Infected -> Hospital: percentage of patients that move from state infected to hospital, default is
0.169
.AmntDaysInfectedToHospital
Z2: Infected -> Hospital: duration (in days) if patients move from state infected to hospital, default is
8.4
.
3
FactorPatientsHospitalToNormal*
Z3: Hospital -> Normal: percentage of patients that move from state hospital to normal, default is
0
. Note: not used. Value is internally calculated as:1 - FactorPatientsHospitalToIntensive - FactorPatientsHospitalToVentilation
AmntDaysHospitalToNormal*
Z3: Hospital -> Normal: duration (in days) if patients move from state hospital to normal, default is
1e6
. Note: not used. Patients move from hospital to normal immediately
4
FactorPatientsHospitalToIntensive
Z4: Hospital -> Intensive: percentage of patients that move from state hospital to intensive, default is
0.012
.AmntDaysHospitalToIntensiv*
Z4: Hospital -> Intensive: duration (in days) if patients move from state hospital to intensive, default is
1e6
. Note: not used. Patients move from hospital to intensive immediately
5
FactorPatientsHospitalToVentilation
Z5: Hospital -> Ventilation: percentage of patients that move from state hospital to ventilation, default is
0.036
.AmntDaysHospitalToVentilation*
Z5: Hospital -> Ventilation: duration (in days) if patients move from state hospitel to ventilation, default is
1e6
. Note: not used. Patients move from hospital to intensive immediately
6
FactorPatientsNormalToHealthy*
Z6: Normal -> Healthy: percentage of patients that move from state normal to healthy, default is
0
. Note: not used. Value is internally calculated as:1 - FactorPatientsNormalToIntensive - FactorPatientsNormalToVentilation - FactorPatientsNormalToDeath
AmntDaysNormalToHealthy
Z6: Normal -> Healthy: duration (in days) if patients move from state normal to healthy, default is
11.6
.
7
FactorPatientsNormalToIntensive
Z7: Normal -> Intensive: percentage of patients that move from state normal to intensive, default is
0.0506
.AmntDaysNormalToIntensive
Z7: Normal -> Intensive: duration (in days) if patients move from state normal to intensive, default is
1.25
.
8
FactorPatientsNormalToVentilation
Z8: Normal -> Ventilation: percentage of patients that move from state normal to ventilation, default is
0.1013
.AmntDaysNormalToVentilation
Z8: Normal -> Ventilation: duration (in days) if patients move from state normal to ventilation, default is
3.63
.
9
FactorPatientsNormalToDeath
Z9: Normal -> Death: percentage of patients that move from state normal to death, default is
0.139
.AmntDaysNormalToDeath
Z9: Normal -> Death: duration (in days) if patients move from state normal to death, default is
11.4
.
10
FactorPatientsIntensiveToAftercare*
Z10: Intensive -> Aftercare: percentage of patients that move from state intensive to aftercare, default is
0.25
. Note: not used. Value is internally calculated as:1 - FactorPatientsIntensiveToVentilation - FactorPatientsIntensiveToDeath - FactorPatientsIntensiveToHealthy
AmntDaysIntensiveToAftercare
Z10: Intensive -> Aftercare: duration (in days) if patients move from state intensive to aftercare, default is
7.0
.
11
FactorPatientsIntensiveToVentilation
Z11: Intensive > Ventilation: percentage of patients that move from state intensive to ventilation, default is
0.25
.AmntDaysIntensiveToVentilation
Z11: Intensive > Ventilation: duration (in days) if patients move from state intensive to ventilation, default is
2.0
.
12
FactorPatientsIntensiveToDeath
Z12: Intensive -> Death: percentage of patients that move from state intensive to death, default is
0.25
.AmntDaysIntensiveToDeath
Z12: Intensive -> Death: duration (in days) if patients move from state intensive to death, default is
2.0
.
12a
- Removed in v11:
FactorPatientsIntensiveToHealthy
Z12a: Intensive -> Healthy: percentage of patients that move from state intensive to healthy, default is
0.25
.AmntDaysIntensiveToHealthy
Z12a: Intensive -> Healthy: duration (in days) if patients move from state intensive to healthy, default is
13.0
.
13
- Removed in v11:
FactorPatientsVentilationToAftercare*
Z13: Ventilation -> Aftercare: percentage of patients that move from state ventilation to aftercare, default is
0.08
. Note: not used. Value is internally calculated as:1 - FactorPatientsVentilationToIntensiveAfter - FactorPatientsVentilationToDeath
- Removed in v11:
AmntDaysVentilationToAftercare
Z13: Ventilation -> Aftercare: duration (in days) if patients move from state ventilation to aftercare, default is
9.0
.
14
FactorPatientsVentilationToIntensiveAfter
Z14: Ventilation -> IntensiveAfter: percentage of patients that move from state ventilation to intensiveAfter, default is
0.42
.AmntDaysVentilationToIntensiveAfter
Z14: Ventilation -> IntensiveAfter: duration (in days) if patients move from state ventilation to intensiveAfter, default is
23.0
.
15
- Removed in v11:
FactorPatientsVentilationToDeath
Z15: Ventilation -> Death: percentage of patients that move from state ventilation to death, default is
0.5
.AmntDaysVentilationToDeath
Z15: Ventilation -> Death: duration (in days) if patients move from state ventilation to death, default is
16.0
.
16
FactorPatientsAftercareToHealthy*
Z16: Aftercare -> Healthy: percentage of patients that move from state aftercare to healthy, default is
1.0
. Note: not used. Value is1
. No branching required, because there is no alternative.AmntDaysAftercareToHealthy
Z16: Aftercare -> Healthy: duration (in days) if patients move from state aftercare to healthy, default is
21.0
.
17 I
FactorPatientsIntensiveAfterToAftercare*
Z17I: IntensiveAfter -> Aftercare: percentage of patients that move from state intensiveAfter to aftercare, default is
0.5
. Note: not used. Value is internally calculated as:1 - FactorPatientsIntensiveAfterToHealthy - FactorPatientsIntensiveAfterToDeath - FactorPatientsIntensiveAfterToHealthy
AmntDaysIntensiveAfterToAftercare
Z17I: IntensiveAfter -> Aftercare: duration (in days) if patients move from state intensiveAfter to aftercare, default is
7.0
.
17 II
- Removed in v11:
AmntDaysIntensiveAfterToHealthy
Z17II: IntensiveAfter -> Healthy: duration (in days) if patients move from state intensiveAfter to healthy, default is
18.0
.
18
FactorPatientsIntensiveAfterToDeath
IntensiveAfter -> Death: percentage of patients that move from state intensiveAfter to death, default is
0.0
.AmntDaysIntensiveAfterToDeath
IntensiveAfter -> Death: duration (in days) if patients move from state intensiveAfter to death, default is
1e-6
.GammaShapeParameter
Gamma shape parameter, default is
1
(exponential distribution).RiskFactorA
Parameter a in the exponential function r(x) = a exp(b x) that models the risk r as a function of the age x, default is
0.02048948
.RiskFactorB
Parameter b in the exponential function r(x) = a exp(b x) that models the risk r as a function of the age x, default is
0.07138200
.RiskMale
Death risk of male patients compared to female , default is
2
.AmntDaysIntensiveAfterToHealthy
IntensiveAfter -> Healthy: duration (in days) if patients move from state intensiveAfter to death, default is
3
.FactorPatientsIntensiveAfterToHealthy
IntensiveAfter -> Healthy: percentage of patients that move from state intensiveAfter to healthy, default is
0.67
.
Usage
babsimHospitalPara()
Value
a list
Examples
# change Gamma parameter
x <- babsimHospitalPara()
x$GammaShapeParameter <- 1.0