get_logic_operation_from_phenotype_id {avidaR}

R Documentation

Get the logic operations computed by a digital organism whose genome encodes a specific phenotype

Description

Get the logic operations encoded by a digital organism having the requested phenotype.

Usage

get_logic_operation_from_phenotype_id(
  phenotype_id = FALSE,
  phenotype_binary = FALSE,
  triplestore
)

Arguments

phenotype_id	Integer, a vector of integers (from 0 to 511), or a logical value (if FALSE, the function returns the entire phenotype space).
phenotype_binary	Logical value (TRUE/FALSE) to show/hide phenotype_id in binary notation (FALSE by default).
triplestore	Object of class triplestore_access which manages database access.

Value

Data frame. Columns: "phenotype_id", "phenotype_binary" (optional), "equals", "exclusive-or", "not-or", "and-not", "or", "orn-not", "and", "not-and", "not"

Examples

# Create triplestore object
avidaDB <- triplestore_access$new()

# Set access options
avidaDB$set_access_options(
  url = "https://graphdb.fortunalab.org",
  user = "public_avida",
  password = "public_avida",
  repository = "avidaDB_test"
)

# One phenotype
get_logic_operation_from_phenotype_id(
  phenotype_id = 1,
  phenotype_binary = TRUE,
  triplestore = avidaDB
)

# More than one phenotype
get_logic_operation_from_phenotype_id(
  phenotype_id = c(1,2,3),
  phenotype_binary = TRUE,
  triplestore = avidaDB
)

# All phenotypes
get_logic_operation_from_phenotype_id(triplestore = avidaDB)

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