Package: autoGO Title: Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations Version: 0.9.1 Authors@R: c( person('Isabella', 'Grassucci', , 'isabella.grassucci@gmail.com', role = 'aut', comment = c(ORCID = '0000-0002-2484-8570')), person('Eleonora', 'Sperandio', , 'eleonora.sperandio@ifo.it', role = 'aut', comment = c(ORCID = '0000-0002-8572-6788')), person('Fabio', 'Ticconi', , 'fabio.ticconi@gmail.com', role = 'cre', comment = c(ORCID = '0000-0001-8905-6657')), person('Alice', 'Massacci', , 'alice.massacci@ifo.it', role = 'aut', comment = c(ORCID = '0000-0001-7780-809X')), person('Lorenzo', 'D\'Ambrosio', , 'lorenzo.dambrosio@ifo.it', role = 'aut', comment = c(ORCID = '0000-0002-9656-7436')), person('Matteo', 'Pallocca', , 'matteo.pallocca@ifo.it', role = 'aut', comment = c(ORCID = '0000-0002-7756-3579'))) Description: Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) . The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce. License: MIT + file LICENSE Encoding: UTF-8 BugReports: https://github.com/mpallocc/auto-go/issues RoxygenNote: 7.2.3 LazyData: true Depends: R (>= 3.5.0), readr (>= 2.1.2), dplyr (>= 1.1.0), enrichR biocViews: Imports: ape, ComplexHeatmap, DESeq2, dichromat, ggplot2, ggrepel, grDevices, GSVA, imguR, openxlsx, purrr, RColorBrewer, reshape2, stats, stringr, SummarizedExperiment, textshape, tidyr, tidyselect, utils Suggests: knitr, rlang, rmarkdown VignetteBuilder: knitr NeedsCompilation: no Packaged: 2023-02-13 22:07:53 UTC; fabio Author: Isabella Grassucci [aut] (), Eleonora Sperandio [aut] (), Fabio Ticconi [cre] (), Alice Massacci [aut] (), Lorenzo D'Ambrosio [aut] (), Matteo Pallocca [aut] () Maintainer: Fabio Ticconi Repository: CRAN Date/Publication: 2023-02-13 22:50:03 UTC