callXXorXY.numeric {aroma.cn}  R Documentation 
Calls XX or XY from ChrX allele B fractions of a normal sample
Description
Calls XX or XY from ChrX allele B fractions of a normal sample.
Usage
## S3 method for class 'numeric'
callXXorXY(betaX, betaY=NULL, flavor=c("density"), adjust=1.5, ...,
censorAt=c(0.5, +1.5), verbose=FALSE)
Arguments
betaX 
A numeric vector containing ChrX allele B fractions.

betaY 
A optional numeric vector containing ChrY allele B fractions.

flavor 
A character string specifying the type of algorithm used.

adjust 
A postive double specifying the amount smoothing for
the empirical density estimator.

... 
Additional arguments passed to
findPeaksAndValleys .

censorAt 
A double vector of length two specifying the range
for which values are considered finite. Values below (above) this
range are treated as Inf (+Inf ).

verbose 
A logical or a Verbose object.

Value
Returns a ...
Missing and nonfinite values
Missing and nonfinite values are dropped before trying to call XX or XY.
Author(s)
Henrik Bengtsson, Pierre Neuvial
See Also
Internally findPeaksAndValleys
is used to identify
the thresholds.
[Package
aroma.cn version 1.6.1
Index]