UnitModel {aroma.affymetrix}R Documentation

The UnitModel class

Description

Package: aroma.affymetrix
Class UnitModel

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--Model
~~~~~~~~~~~~|
~~~~~~~~~~~~+--UnitModel

Directly known subclasses:
AffineCnPlm, AffinePlm, AffineSnpPlm, AlleleSummation, AvgCnPlm, AvgPlm, AvgSnpPlm, ExonRmaPlm, FirmaModel, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, MultiArrayUnitModel, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm, SingleArrayUnitModel

public abstract static class UnitModel
extends Model

This class is abstract and represents a generic unit model, i.e. a model that is applied to each unit separately.

Usage

UnitModel(dataSet=NULL, probeModel=c("pm", "mm", "pm-mm", "min1(pm-mm)", "pm+mm"),
  shift=0, ...)

Arguments

dataSet

An AffymetrixCelSet to which this model should be fitted.

probeModel

A character string specifying how PM and MM values should be modelled. By default only PM signals are used.

shift

An optional amount the signals should be shifted (translated) before fitting the model.

...

Arguments passed to the constructor of Model.

Fields and Methods

Methods:

findUnitsTodo -

Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson


[Package aroma.affymetrix version 3.2.0 Index]