rm.gaps {apex}

Remove gap-only sequences for missing data

Description

In multidna and multiphyDat, some individuals may not be sequenced for all genes, resulting in gap-only sequences for missing data. The generic function rm.gaps has method for both objects; it identifies the missing sequences, and removes gap-only sequences from the alignments wherever needed.

Usage

rm.gaps(x, ...)

## S4 method for signature 'multidna'
rm.gaps(x, ...)

## S4 method for signature 'multiphyDat'
rm.gaps(x, ...)

Arguments

x

a multidna or multiphyDat object.

...

further arguments passed to other methods (currently not used).