richness.yule.test {ape} | R Documentation |
Test of Diversification-Shift With the Yule Process
Description
This function performs a test of shift in diversification rate using probabilities from the Yule process.
Usage
richness.yule.test(x, t)
Arguments
x |
a matrix or a data frame with at least two columns: the first one gives the number of species in clades with a trait supposed to increase or decrease diversification rate, and the second one the number of species in the sister-clades without the trait. Each row represents a pair of sister-clades. |
t |
a numeric vector giving the divergence times of each pair of
clades in |
Value
a data frame with the \chi^2
, the number of degrees of
freedom (= 1), and the P-value.
Author(s)
Emmanuel Paradis
References
Paradis, E. (2012) Shift in diversification in sister-clade comparisons: a more powerful test. Evolution, 66, 288–295.
See Also
slowinskiguyer.test
, mcconwaysims.test
,
diversity.contrast.test
Examples
### see example(mcconwaysims.test)