nodepath {ape}R Documentation

Find Paths of Nodes

Description

This function finds paths of nodes in a tree. The nodes can be internal and/or terminal (i.e., tips).

Usage

nodepath(phy, from = NULL, to = NULL)

Arguments

phy

an object of class "phylo".

from, to

integers giving node or tip numbers.

Details

By default, this function returns all the paths from the root to each tip of the tree. If both arguments from and to are specified, the shortest path of nodes linking them is returned.

Value

a list of vectors of integers (by default), or a single vector of integers.

Author(s)

Emmanuel Paradis

See Also

getMRCA

Examples

tr <- rtree(2)
nodepath(tr)
nodepath(tr, 1, 2)

[Package ape version 5.5 Index]