hivtree {ape} | R Documentation |
Phylogenetic Tree of 193 HIV-1 Sequences
Description
This data set describes an estimated clock-like phylogeny of 193 HIV-1 group M sequences sampled in the Democratic Republic of Congo.
Usage
data(hivtree.newick)
data(hivtree.table)
Format
hivtree.newick
is a string with the tree in Newick format.
The data frame hivtree.table
contains the corresponding internode
distances.
Source
This is a data example from Strimmer and Pybus (2001).
References
Strimmer, K. and Pybus, O. G. (2001) Exploring the demographic history of DNA sequences using the generalized skyline plot. Molecular Biology and Evolution, 18, 2298–2305.
See Also
coalescent.intervals
, collapsed.intervals
[Package ape version 5.8 Index]