SDM {ape} | R Documentation |
This function implements the SDM method of Criscuolo et al. (2006) for a set of n distance matrices.
SDM(...)
... |
2n elements (with n > 1), the first n elements are the
distance matrices: these can be (symmetric) matrices, objects of
class |
Reconstructs a consensus distance matrix from a set of input distance
matrices on overlapping sets of taxa. Potentially missing values in
the supermatrix are represented by NA
. An error is returned if
the input distance matrices can not resolve to a consensus matrix.
a 2-element list containing a distance matrix labelled by the union of the set of taxa of the input distance matrices, and a variance matrix associated to the returned distance matrix.
Andrei Popescu
Criscuolo, A., Berry, V., Douzery, E. J. P. , and Gascuel, O. (2006) SDM: A fast distance-based approach for (super)tree building in phylogenomics. Systematic Biology, 55, 740–755.
bionj
, fastme
, njs
,
mvrs
, triangMtd