| DNAbin2indel {ape} | R Documentation |
Recode Blocks of Indels
Description
This function scans a set of aligned DNA sequences and returns a matrix with information of the localisations and lengths on alignment gaps.
Usage
DNAbin2indel(x)
Arguments
x |
an object of class |
Details
The output matrix has the same dimensions than the input one with, either a numeric value where an alignment gap starts giving the length of the gap, or zero. The rownames are kept.
Value
a numeric matrix.
Author(s)
Emmanuel Paradis
See Also
DNAbin, as.DNAbin, del.gaps,
seg.sites, image.DNAbin,
checkAlignment
[Package ape version 5.8 Index]