get_extinction_list {apTreeshape}R Documentation

Gives the tips of the phylogeny in their extinction order

Description

Orders the tips which will sequentially get extinct/be sampled, based on relative species abundance as explained in the main text of the article.

Usage

get_extinction_list(N, tree, equal.ab = TRUE)

Arguments

N

Tip nuber

tree

A phylo object

equal.ab

If set to TRUE (the default), all species have the same probability to go extinct first

Author(s)

Odile Maliet, Fanny Gascuel & Amaury Lambert

References

Maliet O., Gascuel F., Lambert A. (2018) Ranked tree shapes, non-random extinctions and the loss of phylogenetic diversity, bioRxiv 224295, doi: https://doi.org/10.1101/224295


[Package apTreeshape version 1.5-0.1 Index]