amExample3 {amregtest}

Example 3 Marginal quality data set

Description

This is sample data copied from allelematch::amExampleData in version 5.2.1 of package allelematch. We use this data to test allelematch backwards compatibility.

Format

Data frame with samples in rows, and alleles in columns. Missing data is represented as "-99".

Details

The data in this example have been simulated to represent a data set of marginal quality where the use of allelematch combined with careful manual review of the results is required to achieve a confident assessment of the unique genotypes. At each locus a random 4% of heterozygotes lost their second allele to simulate an allele dropout, and a random 10% of samples at each locus had alleles set to missing.

References

https://github.com/cran/allelematch