amExample2 {amregtest}

Example 2 Good quality data set

Description

This is sample data copied from allelematch::amExampleData in version 5.2.1 of package allelematch. We use this data to test allelematch backwards compatibility.

Format

Data frame with samples in rows, and alleles in columns. Missing data is represented as "-99".

Details

The data in this example have also been simulated, this time to reflect the qualities of good quality data set, where genotyping error and missing data exist, but these can be confidently handled by allelematch without manual intervention. At each locus a random 4% of heterozygotes lost their second allele to simulate an allele dropout, and a random 4% of samples at each locus had alleles set to missing.

References

https://github.com/cran/allelematch