ammiBayes.gen.plot {ammiBayes}R Documentation

Plot genotype effects from ammiBayes object

Description

Plot the posterior mean for an ammiBayes object

Usage

ammiBayes.gen.plot(x, lwd=1, lty=1, pch=18, method="bars",
                  col.bands=NULL, ylim=NULL,
                  xlab=NULL, ylab=NULL, gen.names=NULL)

Arguments

x

An object from gen.effects function.

lwd

A line width, a positive number, default is 1.

lty

The line type. Default is 1.

pch

Either an integer specifying a symbol or a single character to be used as the default in plotting points.

method

Defaults to "bars" to draw error-bar type plots. See panel.xYplot.

col.bands

Define the color of genotype bands.See xYplot.

ylim

A numeric vector of length 2 giving minimum and maximum for the y-axis.

xlab

Label for the x-axis.

ylab

Label for the y-axis.

gen.names

Define the names of genotypes on the x-axis. By default are the levels of the Genotypes.

Author(s)

Luciano A. Oliveira
Carlos P. Silva
Cristian T. E. Mendes
Alessandra Q. Silva
Joel J. Nuvunga
Marcio Balestre
Julio S. S. Bueno-Filho
Fabio M. Correa

References

OLIVEIRA,L.A.; SILVA, C. P.; NUVUNGA, J. J.; SILVA, A. Q.; BALESTRE, M. Credible Intervals for Scores in the AMMI with Random Effects for Genotype. Crop Science, v. 55, p. 465-476, 2015. doi: https://doi.org/10.2135/cropsci2014.05.0369

SILVA, C. P.; OLIVEIRA, L. A.; NUVUNGA, J. J.; PAMPLONA, A. K. A.; BALESTRE, M. A Bayesian Shrinkage Approach for AMMI Models. Plos One, v. 10, p. e0131414, 2015. doi: https://doi.org/10.1371/journal.pone.0131414.

See Also

xYplot

Examples


library(ammiBayes)
data(ammiData)


Env  <- factor(ammiData$amb)
Rep <- factor(ammiData$rep)
Gen  <- factor(ammiData$gen)
Y  <- ammiData$prod

model <- ammiBayes(Y=Y, Gen=Gen, Env=Env, Rep=Rep, iter=10, burn=1, jump=2, chains=2)

genot.effects <- gen.effects(model)


ammiBayes.gen.plot(genot.effects)

[Package ammiBayes version 1.0-1 Index]