compute_amanida {amanida}R Documentation

Combine statistical results and compute vote-counting

Description

compute_amanida Combines for the same entry or metabolite the statistical values of p-value and fold-change. Also is computed a vote-counting for each compound.

Usage

compute_amanida(datafile)

Arguments

datafile

data imported using amanida_read function

Details

Entries corresponding to metabolites are divided by trend and then combined as follows:

Vote-counting is computed without trend division. Punctuation of entries is based on trend, up-regulation gives 1, down-regulation give -1 and equal behavior gives 0. Total sum is divided then by the total number of entries on each compound.

Value

METAtable S4 object with p-value combined, fold-change combined and vote-counting for each compound

Examples

data("sample_data")

compute_amanida(sample_data)


[Package amanida version 0.0.8 Index]