baseline_rollingball {alkahest}

Rolling Ball Baseline Estimation

Description

Rolling Ball Baseline Estimation

Usage

baseline_rollingball(x, y, ...)

## S4 method for signature 'numeric,numeric'
baseline_rollingball(x, y, m, s)

## S4 method for signature 'ANY,missing'
baseline_rollingball(x, m, s)

Arguments

x, y

A numeric vector. If y is missing, an attempt is made to interpret x in a suitable way (see grDevices::xy.coords()).

...

Currently not used.

m

An odd integer giving the window size (i.e. the number of adjacent points to be used; see window_sliding()) for minimization/maximization.

s

An odd integer giving the window size (i.e. the number of adjacent points to be used; see window_sliding()) for smoothing.

Value

Returns a list with two components x and y.

Note

There will be (m - 1) / 2 points both at the beginning and at the end of the data series for which a complete m-width window cannot be obtained. To prevent data loss, progressively wider/narrower windows are used at both ends of the data series.

Author(s)

N. Frerebeau

References

Kneen, M. A. and Annegarn, H. J. (1996). Algorithm for Fitting XRF, SEM and PIXE X-Ray Spectra Backgrounds. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 109/110: 209-213. doi:10.1016/0168-583X(95)00908-6.

See Also

signal_correct()

Other baseline estimation methods: baseline_linear(), baseline_peakfilling(), baseline_polynomial(), baseline_rubberband(), baseline_snip()

Examples

## X-ray diffraction
data("XRD")

## Subset from 20 to 70 degrees
XRD <- signal_select(XRD, from = 20, to = 70)

## Plot spectrum
plot(XRD, type = "l", xlab = expression(2*theta), ylab = "Count")

## Rolling Ball baseline
baseline <- baseline_rollingball(XRD, m = 201, s = 151)

plot(XRD, type = "l", xlab = expression(2*theta), ylab = "Count")
lines(baseline, type = "l", col = "red")