| Example10x {alakazam} | R Documentation |
Small example 10x Genomics Ig V(D)J sequences from CD19+ B cells isolated from PBMCs of a healthy human donor. Down-sampled from data provided by 10x Genomics under a Creative Commons Attribute license, and processed with their Cell Ranger pipeline.
Description
Small example 10x Genomics Ig V(D)J sequences from CD19+ B cells isolated from PBMCs of a healthy human donor. Down-sampled from data provided by 10x Genomics under a Creative Commons Attribute license, and processed with their Cell Ranger pipeline.
Usage
Example10x
Format
A data.frame with the following AIRR style columns:
-
sequence_id: Sequence identifier -
sequence_alignment: IMGT-gapped observed sequence. -
germline_alignment: IMGT-gapped germline sequence. -
v_call: V region allele assignments. -
d_call: D region allele assignments. -
j_call: J region allele assignments. -
c_call: Isotype (C region) assignment. -
junction: Junction region sequence. -
junction_length: Length of the junction region in nucleotides. -
np1_length: Combined length of the N and P regions proximal to the V region. -
np2_length: Combined length of the N and P regions proximal to the J region. -
umi_count: Number of unique molecular identifies atttributed to sequence. -
cell_id: Cell identifier. -
locus: Genomic locus of sequence.
References
Data source: https://support.10xgenomics.com/single-cell-vdj/datasets/2.2.0/vdj_v1_hs_cd19_b
License: https://creativecommons.org/licenses/by/4.0/