DEFAULT_COLORS {alakazam} | R Documentation |
Default colors
Description
Default color palettes for DNA characters, Ig isotypes, and TCR chains.
Usage
DNA_COLORS
IG_COLORS
TR_COLORS
Format
Named character vectors with hexcode colors as values.
-
DNA_COLORS
: DNA character colorsc("A", "C", "G", "T")
. -
IG_COLORS
: Ig isotype colorsc("IGHA", "IGHD", "IGHE", "IGHG", "IGHM", "IGHK", "IGHL")
. -
TR_COLORS
: TCR chain colorsc("TRA", "TRB", "TRD", "TRG")
.
An object of class character
of length 4.
An object of class character
of length 7.
An object of class character
of length 4.
Examples
# IG_COLORS as an isotype color set for ggplot
isotype <- c("IGHG", "IGHM", "IGHM", "IGHA")
db <- data.frame(x=1:4, y=1:4, iso=isotype)
g1 <- ggplot(db, aes(x=x, y=y, color=iso)) +
scale_color_manual(name="Isotype", values=IG_COLORS) +
geom_point(size=10)
plot(g1)
# DNA_COLORS to translate nucleotide values to a vector of colors
# for use in base graphics plots
seq <- c("A", "T", "T", "C")
colors <- translateStrings(seq, setNames(names(DNA_COLORS), DNA_COLORS))
plot(1:4, 1:4, col=colors, pch=16, cex=6)
[Package alakazam version 1.3.0 Index]