plotsignal {adwave}

Plot Localized Admixture Signals

Description

Plotting function for objects of class adsig.

Usage

plotsignal(x, ind = NULL, popA = NULL, popB = NULL, xlab = NULL, ylab = NULL, 
		ylim = NULL, main = NULL)

Arguments

x

object of class adsig for plotting.

ind

character giving ID of a single individual to plot.

popA

(optional) name of ancestral population 1.

popB

(optional) name of ancestral population 2.

xlab

(optional) character string for x axis label.

ylab

(optional) character string for y axis label.

ylim

(optional) vector giving plotting range for y axis.

main

(optional) character string for title.

Value

Produces figure.

Author(s)

Jean Sanderson

References

Sanderson J, H Sudoyo, TM Karafet, MF Hammer and MP Cox. 2015. Reconstructing past admixture processes from local genomic ancestry using wavelet transformation. Genetics 200:469-481. https://doi.org/10.1534/genetics.115.176842

See Also

signal

Examples

data(admix)

# Generate the admixture signal with windowing
AdexPCA2 <- signal(admix$data,popA="popA",popB="popB",populations=admix$populations,
		tol=0.001,n.signal=1000,window.size=0.01)

# Plot resulting admixture signal for one individual
plotsignal(AdexPCA2,ind="AD00001",popA=AdexPCA2$popA,popB=AdexPCA2$popB)