repool {adegenet} | R Documentation |
Pool several genotypes into a single dataset
Description
The function repool
allows to merge genotypes from different
genind objects into a single 'pool' (i.e. a new genind).
The markers have to be the same for all objects to be merged, but
there is no constraint on alleles.
Usage
repool(..., list = FALSE)
Arguments
... |
a list of genind objects, or a series of genind objects separated by commas |
list |
a logical indicating whether a list of objects with matched alleles shall be returned (TRUE), or a single genind object (FALSE, default). |
Details
This function can be useful, for instance, when hybrids are created
using hybridize
, to merge hybrids with their parent
population for further analyses. Note that repool
can also
reverse the action of seppop
.
Author(s)
Thibaut Jombart t.jombart@imperial.ac.uk
See Also
Examples
## Not run:
## use the cattle breeds dataset
data(microbov)
temp <- seppop(microbov)
names(temp)
## hybridize salers and zebu -- nasty cattle
zebler <- hybridize(temp$Salers, temp$Zebu, n=40)
zebler
## now merge zebler with other cattle breeds
nastyCattle <- repool(microbov, zebler)
nastyCattle
## End(Not run)
[Package adegenet version 2.1.10 Index]