| read.genetix {adegenet} | R Documentation |
Reading data from GENETIX
Description
The function read.genetix reads GENETIX data files (.gtx) and convert
them into a genind object.
Usage
read.genetix(file = NULL, quiet = FALSE)
Arguments
file |
a character string giving the path to the file to convert, with the appropriate extension. |
quiet |
logical stating whether a conversion message must be printed (TRUE,default) or not (FALSE). |
Details
Note: read.genetix is meant for DIPLOID DATA ONLY. Haploid data with
the GENETIX format can be read into R using read.table or
read.csv after removing headers and 'POP' lines, and then converted
using df2genind.
Value
an object of the class genind
Author(s)
Thibaut Jombart t.jombart@imperial.ac.uk
References
Belkhir K., Borsa P., Chikhi L., Raufaste N. & Bonhomme F.
(1996-2004) GENETIX 4.05, logiciel sous Windows TM pour la genetique des
populations. Laboratoire Genome, Populations, Interactions, CNRS UMR 5000,
Universite de Montpellier II, Montpellier (France).
See Also
import2genind, df2genind,
read.fstat, read.structure,
read.genepop
Examples
obj <- read.genetix(system.file("files/nancycats.gtx",package="adegenet"))
obj