| read.genepop {adegenet} | R Documentation |
Reading data from Genepop
Description
The function read.genepop reads Genepop data files (.gen) and convert
them into a genind object.
Usage
read.genepop(file, ncode = 2L, quiet = FALSE)
Arguments
file |
a character string giving the path to the file to convert, with the appropriate extension. |
ncode |
an integer indicating the number of characters used to code an allele. |
quiet |
logical stating whether a conversion message must be printed (TRUE,default) or not (FALSE). |
Details
Note: read.genepop is meant for DIPLOID DATA ONLY. Haploid data with
the Genepop format can be read into R using read.table or
read.csv after removing headers and 'POP' lines, and then converted
using df2genind.
Value
an object of the class genind
Author(s)
Thibaut Jombart t.jombart@imperial.ac.uk
References
Raymond M. & Rousset F, (1995). GENEPOP (version 1.2):
population genetics software for exact tests and ecumenicism. J.
Heredity, 86:248-249
See Also
import2genind, df2genind,
read.fstat, read.structure,
read.genetix
Examples
obj <- read.genepop(system.file("files/nancycats.gen",package="adegenet"))
obj