read.fstat {adegenet} | R Documentation |
Reading data from Fstat
Description
The function read.fstat
reads Fstat data files (.dat) and convert
them into a genind object.
Usage
read.fstat(file, quiet = FALSE)
Arguments
file |
a character string giving the path to the file to convert, with the appropriate extension. |
quiet |
logical stating whether a conversion message must be printed (TRUE,default) or not (FALSE). |
Details
Note: read.fstat
is meant for DIPLOID DATA ONLY. Haploid data with
the Hierfstat format can be read into R using read.table
or
read.csv
after removing headers and 'POP' lines, and then converted
using df2genind
.
Value
an object of the class genind
Author(s)
Thibaut Jombart t.jombart@imperial.ac.uk
References
Fstat (version 2.9.3). Software by Jerome Goudet.
http://www2.unil.ch/popgen/softwares/fstat.htm
See Also
import2genind
, df2genind
,
read.genetix
, read.structure
,
read.genepop
Examples
obj <- read.fstat(system.file("files/nancycats.dat",package="adegenet"))
obj
[Package adegenet version 2.1.10 Index]